(1)
OTHER.ip
(5)
OTHER.mut
(5)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(28)
TESTES

Sense strand
AGCTCGAGGCTGACGACGATCCGGGGTTACCTGGGCACAACAACGAGGAGGTCGAGACCGAGGGGGGCTCCGAGCTGGAGGGGACCGCGCAGCCACCGCCGCCCGGGCTGCAGCCGCACCCGGAGCCCGGCGGCTACTCGGGGCCGGACGGACATTGTGAGAGTGCGCGGGGCGGGGGACCGGGGAGCCTGGAGTCCGGGCCGAGGACGGGCTGTGGGACGCGGGAGCTCGACTCCACAGAGATCCAGGA
.................................................................(((((((((..((......))....((((.(((..(((((((.(((....)))))))).)).))).)))).))))))))).........................................................................................................
...............................................................64...................................................................................................165...................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT1()
Testes Data. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
...............................TGGGCACAACAACGAGGAGGTCGAGACC............................................................................................................................................................................................... 28 1 9.00 9.00 - 4.00 3.00 - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................GGCCGAGGACGGGCTGTGGGACGC............................ 24 1 9.00 9.00 9.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................TGGGCACAACAACGAGGAGGTCGAGAC................................................................................................................................................................................................ 27 1 8.00 8.00 - 2.00 3.00 - - - 1.00 - 2.00 - - - - - - - - - - - - - - - - - - -
.............................CCTGGGCACAACAACGAGGAG........................................................................................................................................................................................................ 21 1 8.00 8.00 8.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................GACCGCGCAGCCACCGCCGCC................................................................................................................................................... 21 1 7.00 7.00 7.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................TCCGAGCTGGAGGGGACCGCGCAGC............................................................................................................................................................. 25 1 6.00 6.00 - 1.00 1.00 - - - - 1.00 - - - - 3.00 - - - - - - - - - - - - - - -
..........TGACGACGATCCGGGGTTACCTGGGCAC.................................................................................................................................................................................................................... 28 1 4.00 4.00 - - 1.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................TGGGCACAACAACGAGGAGGTCGAGA................................................................................................................................................................................................. 26 1 3.00 3.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
...........................TACCTGGGCACAACAACGAGGAGGTCG.................................................................................................................................................................................................... 27 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TCGGGGCCGGACGGACATTGTGAG......................................................................................... 24 1 2.00 2.00 - - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
.......GGCTGACGACGATCCGGGGTTACCTG......................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
......AGGCTGACGACGATCCGGGGTTACCTGG........................................................................................................................................................................................................................ 28 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................TCCGAGCTGGAGGGGACCGCGCAGCC............................................................................................................................................................ 26 1 2.00 2.00 - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...................................................TCGAGACCGAGGGGGGCTCCGAGCTGG............................................................................................................................................................................ 27 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - -
.......................................................................................................................................ACTCGGGGCCGGACGGACATT.............................................................................................. 21 1 2.00 2.00 - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - -
.........................................................................................................................................TCGGGGCCGGACGGACATTGTGAGA........................................................................................ 25 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................GAGGTCGAGACCGAGGGGGG....................................................................................................................................................................................... 20 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - -
.....................................CAACAACGAGGAGGTCGAGACCGAGG........................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - 1.00 - - - - - - - - - - - 1.00 - - - - - - - - -
....................................................................TCCGAGCTGGAGGGGACCGCGCAGCCACC......................................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TCGGGGCCGGACGGACATTGTGA.......................................................................................... 23 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................TGGGCACAACAACGAGGAGGTCGAGACt............................................................................................................................................................................................... 28 t 1.00 8.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................CTCGGGGCCGGACGGAC................................................................................................. 17 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................CGGCTACTCGGGGCCGGACGGACATT.............................................................................................. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............CGACGATCCGGaac............................................................................................................................................................................................................................... 14 aac 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
......................................................................................................................................TACTCGGGGCCGGACGGACATTatgt.......................................................................................... 26 atgt 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................GGGGTTACCTGGGCACAACAACGAGGAGGTCGA................................................................................................................................................................................................... 33 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..........................................................................................................................................................TTGTGAGAGTGCGCGGGGCGGG.......................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..........TGACGACGATCCGGGGTTACCTGGGC...................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................CACAACAACGAGGAGGTCGAGACCGAGG........................................................................................................................................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................GAGGAGGTCGAGACCGAGGGGGGCTCC................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................CAACAACGAGGAGGTCGAGACCGAG............................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.....................................................................................................................................................GGACATTGTGAGAGTGCGCG................................................................................. 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.........................................................................................................................................TCGGGGCCGGACGGACATTa............................................................................................. 20 a 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................GGTCGAGACCGAGGGGGGCT..................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
......................................................................................................................................TACTCGGGGCCGGACGGACA................................................................................................ 20 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................CGAGGACGGGCTGTGGG................................ 17 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..CTCGAGGCTGACGACGATCCGGGGTTA............................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...........................................................................................................................................................................................................AGGACGGGCTGTGGGACGC............................ 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..............................CTGGGCACAACAACGAGGAGGTCGAGACC............................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
...............................TGGGCACAACAACGAGGAGGTCGAGACCGt............................................................................................................................................................................................. 30 t 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................GTCGAGACCGAGGGGG........................................................................................................................................................................................ 16 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
......................................................................CGAGCTGGAGGGGACCGCGCAGCCACC......................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................CAACAACGAGGAGGTCGAGACCGAGGG.......................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................TTACCTGGGCACAACAACGAGGAGGTC..................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
....................................................................................................................................................CGGACATTGTGAGAGTGCGCGG................................................................................ 22 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.................................................................................................................................GCGGCTACTCGGGGCCGGACGGACA................................................................................................ 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.........................................AACGAGGAGGTCGAGACCGAGGGGGGCT..................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.........................................................................................................................................TCGGGGCCGGACGGACA................................................................................................ 17 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................GGCACAACAACGAGGAGGTCGAGAC................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................GGGGCCGGACGGACATTGTGAG......................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
....................................................................TCCGAGCTGGAGGGGACCGCGCAGCCAC.......................................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..CTCGAGGCTGACGACGATCCGGGGTT.............................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................GTGAGAGTGCGCGGGGCGGGG......................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...TCGAGGCTGACGACGATCCGGGGTTA............................................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
AGCTCGAGGCTGACGACGATCCGGGGTTACCTGGGCACAACAACGAGGAGGTCGAGACCGAGGGGGGCTCCGAGCTGGAGGGGACCGCGCAGCCACCGCCGCCCGGGCTGCAGCCGCACCCGGAGCCCGGCGGCTACTCGGGGCCGGACGGACATTGTGAGAGTGCGCGGGGCGGGGGACCGGGGAGCCTGGAGTCCGGGCCGAGGACGGGCTGTGGGACGCGGGAGCTCGACTCCACAGAGATCCAGGA
.................................................................(((((((((..((......))....((((.(((..(((((((.(((....)))))))).)).))).)))).))))))))).........................................................................................................
...............................................................64...................................................................................................165...................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT1()
Testes Data. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
.........................................................................................................................................................................................................................GACGCGGGAGCTCGACTCCACAGAGATCCA... 30 1 2.00 2.00 - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................GCAGCCGCACCCGGcttt............................................................................................................................... 18 cttt 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.........CTGACGACGATCCGGGGTTACCTGGGCA..................................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........GACGACGATCCGGGGTTACCTGGGCACA................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.......................GGGTTACCTGGGCACAACAACGAGGA......................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................GACTCCACAGAGATCCAG.. 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.....................................................................................................................................................................................................................................TCCACAGAGATCCAcagc... 18 cagc 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................GACGGGCTGTGGGAgctc............................... 18 gctc 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
............................................................................................................................................................................................................................GCGGGAGCTCGACTCCACAGAGATCCA... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
................CGATCCGGGGTTACCTGGGCACA................................................................................................................................................................................................................... 23 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -