| Gene: Pvrl2 | ID: uc009fnd.1_intron_0_0_chr7_20303137_r.3p | SPECIES: mm9 |
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(6) OTHER.mut |
(15) TESTES |
| AGATCAAAGAGGAAGACTGAGACAGGGTAAGGAGGTCCGTGCTGGGCTTGGGTTAGAAGTGACTGTACAGAGAAGTTTGGTCGAGGGAGAAAGGATGGCAGTGGTGTAGTTGGATCTGATTGGCAGGGGGCAGATCTAGGATGCCATCCTGAGACTGAGGTGACTTTGACATCTTGCTTTTGCTCCCTCCCCACTTCTAGGAGATGCCTCGGTATCACGAGCTGCCCACTCTGGAAGAGCGGTCAGGGCC |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | GSM475281(GSM475281) total RNA. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................TGGGTTAGAAGTGACTGTACAGAGA................................................................................................................................................................................. | 25 | 1 | 7.00 | 7.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TAGAAGTGACTGTACAGAGAAGTTTGG.......................................................................................................................................................................... | 27 | 1 | 7.00 | 7.00 | 3.00 | 2.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - |
| ..........................................................................................................TAGTTGGATCTGATTGGCAGGGGGC....................................................................................................................... | 25 | 1 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................GTTTGGTCGAGGGAGAAAGGATGGCAGT.................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TGAGACTGAGGTGACTTTGACATCTT........................................................................... | 26 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................GTGGTGTAGTTGGATCTGATTGGCAGG........................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ...............................................TTGGGTTAGAAGTGACTGTACAGAGA................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................TAGAAGTGACTGTACAGAGAAGTTTGGTC........................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................TCGGTATCACGtaag........................... | 15 | taag | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................CAGGGGGCAGATCTAGGATGCg......................................................................................................... | 22 | g | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ....................GACAGGGTAAGGAGGTCCGTGCTGGG............................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................AAGTGACTGTACAGAGAAGTTTGGTC........................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................ACATCTTGCTTTTGCTCCCTCC............................................................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ........................................................................................................................TGGCAGGGGGCAGATCTAGGATGa.......................................................................................................... | 24 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...........................................................................................................................................................................................................................AGCTGCCCACTCTGGAAGA............ | 19 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TGGGTTAGAAGTGACTGTACAGAGAA................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...........................................................................................................................CAGGGGGCAGATCTAGGATGCC......................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .......................................................................................................................................................................................................................CACGAGCTGCCCACTCTGGAAGAGCG......... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................TATCACGAGCTGCCCACTCTGGAAGAGC.......... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................TTCTAGGAGATGCCTCGGTATCACGAGC............................ | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................GTAGTTGGATCTGtgtc................................................................................................................................ | 17 | tgtc | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................TGGCAGGGGGCAGATCTAGtt............................................................................................................. | 21 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ....................................................................................................................................................................................................................TATCACGAGCTGCCCACTCTGGAAGAG........... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................CAGGGGGCAGATCTAGGAT............................................................................................................ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .......................................TGCTGGGCTTGGGTTAGAAGTGACTa......................................................................................................................................................................................... | 26 | a | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................AGTGGTGTAGTTGGATCTGATTGGCA............................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................GTGGTGTAGTTGGATCTG.................................................................................................................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - |
| AGATCAAAGAGGAAGACTGAGACAGGGTAAGGAGGTCCGTGCTGGGCTTGGGTTAGAAGTGACTGTACAGAGAAGTTTGGTCGAGGGAGAAAGGATGGCAGTGGTGTAGTTGGATCTGATTGGCAGGGGGCAGATCTAGGATGCCATCCTGAGACTGAGGTGACTTTGACATCTTGCTTTTGCTCCCTCCCCACTTCTAGGAGATGCCTCGGTATCACGAGCTGCCCACTCTGGAAGAGCGGTCAGGGCC |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | GSM475281(GSM475281) total RNA. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................TCCTGAGACTGAGGTGACTTTGACATCTTGa.......................................................................... | 31 | a | 3.00 | 0.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................CACTTCTAGGAGATGCCTCGGTATCA................................. | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - |
| ................................................................................................................................................................................................ACTTCTAGGAGATGCCTCGGTATCA................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .................................................................................................GCAGTGGTGTAGTTGGATCTGATTGGCA............................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |