| Gene: Clptm1 | ID: uc009fmq.1_intron_2_0_chr7_20220363_r | SPECIES: mm9 |
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(3) OTHER.mut |
(3) PIWI.ip |
(16) TESTES |
| TCAAAGACAAGTCCACCTATATTGAATCTTCAACCAAAGTATATGATGATGTGAGTGACTCCCATGGCCCTGGGGTGGTCTCCAAGCACCTACACTCATCAGGGGCAGGCTGGGCCCTTGGTCTTGCCTGCCAGTATCACTGCCAGGCCCATATCACACCCTGTGTTCCCCGCCTGCCACAGCTACTTCCTGGCCAAGTCCAGAGTTCCCAGAGCCACCTGGAAATTCCCCTGGCCTAGCCTGCTGGACCAGGTGTGGGTGGATGAGGACAAGGAGTGGAAGCACTGAGCAGGGCCCGCAGAGCTGGCCTGTTCTGTGACCCCCACCCCACCATCACCCCACAGATGGCGTTCCGGTACCTGTCATGGATCCTCTTTCCCTTGCTGGGCTGCTA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................................................................................................................TGGAAGCACTGAGCAGGcagt................................................................................................. | 21 | cagt | 10.00 | 0.00 | 7.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................AAGGAGTGGAAGCACTGAGCAG...................................................................................................... | 22 | 1 | 8.00 | 8.00 | - | 7.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................AGGAGTGGAAGCACTGAGCAG...................................................................................................... | 21 | 1 | 5.00 | 5.00 | - | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................AGGAGTGGAAGCACTGAGCAGGa.................................................................................................... | 23 | a | 4.00 | 4.00 | - | - | - | - | - | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................TGGCGTTCCGGTAga.................................. | 15 | ga | 4.00 | 0.00 | - | - | 1.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................AGGAGTGGAAGCACTGAGCAGG..................................................................................................... | 22 | 1 | 4.00 | 4.00 | - | - | 1.00 | - | - | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................TGGCGTTCCGGTAgaa................................. | 16 | gaa | 2.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...............................................................................................................................................................................................................................................................................AGGAGTGGAAGCACTGAGCAGGGCat................................................................................................. | 26 | at | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................GTGGATGAGGACAAGGAGTGGAAGCACTGAGC........................................................................................................ | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................................................................................................................................................................................................................................................ACCAGGTGTGGGTGGATGAGGACAA.......................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................TGTGGGTGGATGAGGACAAGGAGTGG................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................GGATGAGGACAAGGAGTGGAAGCACTGA.......................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................TGTCATGGATCCTCTTTCCCTTGCTGGGCTGC.. | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................................AGTATATGATGATcct..................................................................................................................................................................................................................................................................................................................................................... | 16 | cct | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................AAGGAGTGGAAGCACTGAGCAGa..................................................................................................... | 23 | a | 1.00 | 8.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ....................ATTGAATCTTCAACCAAAGT.................................................................................................................................................................................................................................................................................................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .........................................................................................................................................................................................................................................................................................................................................................TGGCGTTCCGGTAgatc................................ | 17 | gatc | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................GCGTTCCGGTAgcta................................ | 15 | gcta | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................ATGGCGTTCCGGTAgcta................................ | 18 | gcta | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................TGGCGTTCCGGTAgttc................................ | 17 | gttc | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................AGGAGTGGAAGCACTGAGCAGt..................................................................................................... | 22 | t | 1.00 | 5.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................TGGCGTTCCGGTAgcta................................ | 17 | gcta | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTGACTCCCATGGCCCTGGG................................................................................................................................................................................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................GGCGTTCCGGTAgaa................................. | 15 | gaa | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................AGGAGTGGAAGCACTGAGCAGGGaa.................................................................................................. | 25 | aa | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................AGGAGTGGAAGCACTGAGCAGGtt................................................................................................... | 24 | tt | 1.00 | 4.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| TCAAAGACAAGTCCACCTATATTGAATCTTCAACCAAAGTATATGATGATGTGAGTGACTCCCATGGCCCTGGGGTGGTCTCCAAGCACCTACACTCATCAGGGGCAGGCTGGGCCCTTGGTCTTGCCTGCCAGTATCACTGCCAGGCCCATATCACACCCTGTGTTCCCCGCCTGCCACAGCTACTTCCTGGCCAAGTCCAGAGTTCCCAGAGCCACCTGGAAATTCCCCTGGCCTAGCCTGCTGGACCAGGTGTGGGTGGATGAGGACAAGGAGTGGAAGCACTGAGCAGGGCCCGCAGAGCTGGCCTGTTCTGTGACCCCCACCCCACCATCACCCCACAGATGGCGTTCCGGTACCTGTCATGGATCCTCTTTCCCTTGCTGGGCTGCTA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................................CTTCCTGGCCAAGTCCAGAGTTCCCA....................................................................................................................................................................................... | 26 | 1 | 8.00 | 8.00 | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |