| Gene: Lig1 | ID: uc009ffr.1_intron_0_0_chr7_13864823_f.5p | SPECIES: mm9 |
|
|
(5) OTHER.mut |
(1) OVARY |
(2) PIWI.ip |
(1) PIWI.mut |
(15) TESTES |
| TTGAAGACTAGAGAAGCTTGGCGCGATGAGTGTCAGGAGCCAGGGAAAAGGTGAGCTTGGCTGCCAGAAGGGGCACGGATGGGATAAGACTGGAGATCTGCAGACACTTAGGGGAGGGTCAGGTCTTGTTGCTTAGTGTATATGGAGTTGAAGAGGCAGAGAAACTTGAACAGGGAGGACAGAGGGAAGTTGTCAGGGTGAGGATGGACATTTGGAAAGGGAAGCTGGCCTTTGGCATTTGGCAGCCAAG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014234(GSM319958) Ovary total. (ovary) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................................................................TGGACATTTGGAAAGGGAAGCTGGCC.................... | 26 | 2 | 15.00 | 15.00 | 4.50 | 4.50 | 0.50 | 1.00 | - | 2.50 | - | - | - | 0.50 | - | 1.00 | 0.50 | - | - | - |
| ............................................................................................................................................................................................................TGGACATTTGGAAAGGGAAGCTGGC..................... | 25 | 2 | 11.00 | 11.00 | 8.50 | 0.50 | 1.00 | 0.50 | - | - | - | - | - | - | - | - | 0.50 | - | - | - |
| ..........................................................................................TGGAGATCTGCAGACACTTAGGGGA....................................................................................................................................... | 25 | 2 | 4.00 | 4.00 | 3.00 | - | - | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................GAGAAACTTGAACAGGGAGGACAGA................................................................... | 25 | 2 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................TAAGACTGGAGATCTGCAGACACTTAGG.......................................................................................................................................... | 28 | 2 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TGAAGAGGCAGAGAAACTTGAACAGG............................................................................ | 26 | 2 | 1.50 | 1.50 | - | - | - | - | 1.00 | - | 0.50 | - | - | - | - | - | - | - | - | - |
| ......................................................................................AGACTGGAGATCTGCAGACACTTAGGGGt....................................................................................................................................... | 29 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TGGGATAAGACTGGAGATCTGCAGAC................................................................................................................................................. | 26 | 2 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................GACATTTGGAAAGGGAAGCTGGgttt.................. | 26 | gttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..............................................................................................................................................................................................TGTCAGGGTGAGGATGGACATTTGa................................... | 25 | a | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................TGGACATTTGGAAAGGGAAGCTGGCCT................... | 27 | 2 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................AGACTGGAGATCTGCAGACACTTAGG.......................................................................................................................................... | 26 | 2 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................AGTGTCAGGAGCCAGGGAAAAGGagaa................................................................................................................................................................................................... | 27 | agaa | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................TGAACAGGGAGGACAGAGGGAAGT............................................................ | 24 | 2 | 1.00 | 1.00 | - | - | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................GAAACTTGAACAGGGAGGACAGAGGGA............................................................... | 27 | 2 | 0.50 | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................TGTCAGGAGCCAGGGAAAAGGTGAG................................................................................................................................................................................................... | 25 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................ATTTGGAAAGGGAAGCTGGCCTTTGGCA............. | 28 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |
| ...............................................................................TGGGATAAGACTGGAGATCTGCAGA.................................................................................................................................................. | 25 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - |
| .TGAAGACTAGAGAAGCTTGGCGCGA................................................................................................................................................................................................................................ | 25 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................ACGGATGGGATAAGACTGGAGATCTGC..................................................................................................................................................... | 27 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TGTTGCTTAGTGTATATGGAGTTGA................................................................................................... | 25 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - |
| ....................................................................................TAAGACTGGAGATCTGCAGACACTT............................................................................................................................................. | 25 | 2 | 0.50 | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TGTTGCTTAGTGTATATGGAGTTGAAG................................................................................................. | 27 | 2 | 0.50 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TGTTGCTTAGTGTATATGGAGTTG.................................................................................................... | 24 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - |
| .....................................................................................................................................TAGTGTATATGGAGTTGAAGAGGCA............................................................................................ | 25 | 2 | 0.50 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................GCAGAGAAACTTGAACAGGGAGGACAGAGG................................................................. | 30 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| .......................................................................................................................................................AGAGGCAGAGAAACTTGAACAGGG........................................................................... | 24 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................TGAACAGGGAGGACAGAGGG................................................................ | 20 | 2 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TGGAGATCTGCAGACACTTAGGGGAG...................................................................................................................................... | 26 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - |
| ............................................................................................................................................TATGGAGTTGAAGAGGCAGAGAAACT.................................................................................... | 26 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - |
| .................................................................................GGATAAGACTGGAGATCTGCAGACACTT............................................................................................................................................. | 28 | 2 | 0.50 | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................TGGACATTTGGAAAGGGAAGCTGG...................... | 24 | 2 | 0.50 | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................TTGTTGCTTAGTGTATATGGAGTTGAAG................................................................................................. | 28 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - |
| ....................................................................................TAAGACTGGAGATCTGCAGACACTTAGGGG........................................................................................................................................ | 30 | 2 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTGTCAGGAGCCAGGGAAAAGGT...................................................................................................................................................................................................... | 26 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| TTGAAGACTAGAGAAGCTTGGCGCGATGAGTGTCAGGAGCCAGGGAAAAGGTGAGCTTGGCTGCCAGAAGGGGCACGGATGGGATAAGACTGGAGATCTGCAGACACTTAGGGGAGGGTCAGGTCTTGTTGCTTAGTGTATATGGAGTTGAAGAGGCAGAGAAACTTGAACAGGGAGGACAGAGGGAAGTTGTCAGGGTGAGGATGGACATTTGGAAAGGGAAGCTGGCCTTTGGCATTTGGCAGCCAAG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014234(GSM319958) Ovary total. (ovary) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................AACAGGGAGGACAGAGGGAAGTTGTCA....................................................... | 27 | 2 | 0.50 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - |