(3)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(3)
PIWI.mut
(29)
TESTES

Sense strand
AACCTAACGGCCTGTGAGTACAGGACAGAGTGTGTCACGGCTGATGGAGTGTAAGTCTGACAAACCAAAAGCGGGACTGGCCGACCGGTTGTATGTGTCCGACAGGTTGTGCTACGTCTGATGCGTCGTGGCCTTGGATATCTCGTCGAGTGACTGATGAAGCCACCGACAGAAATAGCTTTTCGATGGACTTTAAGATGGGTTTGTAGCCAGGCGTGGTAGCGCAAGCCTTTAATCCCAGCACTCGGAG
....................................................((((((..(((.(((...((((((((((((((((.((((........)))).))))).)))).))))..)))....)))..)))....(((.((((.(((.((.....)).))))))))))..............)))))).........................................................
..................................................51...................................................................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
.................................................................................................................................................................................................TAAGATGGGTTTGTAGCCAGGCGTGGTA............................. 28 1 7.00 7.00 6.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................TAGCTTTTCGATGGACTTTAAGATGG................................................. 26 1 6.00 6.00 - - 3.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - 1.00 - - -
.........................................................TGACAAACCAAAAGCGGGACTGGCCGACC.................................................................................................................................................................... 29 1 6.00 6.00 - 2.00 - 1.00 - 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - -
..............TGAGTACAGGACAGAGTGTGTCACGGC................................................................................................................................................................................................................. 27 1 4.00 4.00 - 1.00 - 1.00 - - - - - - - - - - 1.00 1.00 - - - - - - - - - - - - - -
.................................................................................................................................................................................................TAAGATGGGTTTGTAGCCAGGCGTG................................ 25 1 4.00 4.00 - 1.00 - 1.00 - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - -
................................................GTGTAAGTCTGACAAACCAAAAGCGGG............................................................................................................................................................................... 27 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................TAGCTTTTCGATGGACTTTAAGATGGG................................................ 27 1 3.00 3.00 - - - - - - 1.00 - - - - - 1.00 - - - - - - - 1.00 - - - - - - - - -
............................................................................................................................................................................................................TGTAGCCAGGCGTGGTAGCGCAAGCCT................... 27 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
........................................................................................TTGTATGTGTCCGACAGGTTGTGCTA........................................................................................................................................ 26 1 2.00 2.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...............................................................................................................................................................................TAGCTTTTCGATGGACTTTAAGATGGGT............................................... 28 1 2.00 2.00 - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.................................................TGTAAGTCTGACAAACCAAAAGCGGGA.............................................................................................................................................................................. 27 1 2.00 2.00 - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - -
..................TACAGGACAGAGTGTGTCACGGCTGA.............................................................................................................................................................................................................. 26 1 2.00 2.00 - - - - - - - - - 1.00 - - - - - - - - - 1.00 - - - - - - - - - -
..........................................................................................................................................................TGATGAAGCCACCGACAGAAATAGCTT..................................................................... 27 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TGGATATCTCGTCGAGTGACTGATGAAG........................................................................................ 28 1 2.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
....................CAGGACAGAGTGTGTCACGGCTGATG............................................................................................................................................................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................TGTAAGTCTGACAAACCAAAAGCGGGAC............................................................................................................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................AGTGTAAGTCTGACAAACCAAAAGCGGG............................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
................................................................................................................................................................................AGCTTTTCGATGGACTTTAAGATGGGT............................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............GAGTACAGGACAGAGTGTG........................................................................................................................................................................................................................ 19 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................TGATGGAGTGTAAGTCTGACAAACCA....................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
..................................................................................................................................GCCTTGGATATCTCGTCGAG.................................................................................................... 20 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................GAAATAGCTTTTCGATGGACTTTAAGATGGGTT.............................................. 33 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.........................................................TGACAAACCAAAAGCGGGACTGGCCGA...................................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................TGGACTTTAAGATGGGTTTGTAGCCAGGC................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..........................AGAGTGTGTCACGGCTGATGGAGTG....................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................CGATGGACTTTAAGATGGGTTTGTAGCC....................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................TGGCCTTGGATATCTCGTCGAGTGcctg.............................................................................................. 28 cctg 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................TAAGTCTGACAAACCAAAAGCGGGACTGGC......................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................GTACAGGACAGAGTGTG........................................................................................................................................................................................................................ 17 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................CAAAAGCGGGACTGGCCGACCGGTT................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................TGACAAACCAAAAGCGGGACTGGCCGAC..................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TGGATATCTCGTCGAGTGACTGATG........................................................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TGAAGCCACCGACAGAAATAGCTTTT................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
....................................................................................................................................CTTGGATATCTCGTCGAG.................................................................................................... 18 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................CAGGACAGAGTGTGTCACGGCTGATGG........................................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........CCTGTGAGTACAGGACAGAGTG.......................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
..............................................GAGTGTAAGTCTGACAAACCAAAAGC.................................................................................................................................................................................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................GATGGACTTTAAGATGGGTTTGTAGC........................................ 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................ACAGGACAGAGTGTGTCACGGCTGATGGAGT........................................................................................................................................................................................................ 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.........................CAGAGTGTGTCACGGCTGATGGAGTG....................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................TGGACTTTAAGATGGGTTTGTAGCCA...................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................TCGATGGACTTTAAGATGGGTTTGTAG......................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................TACAGGACAGAGTGTGTCACGGCTGATt............................................................................................................................................................................................................ 28 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................ACAGGACAGAGTGTGTCACGGCTGATGG........................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................TAAGTCTGACAAACCAAAAGCGGGACTGG.......................................................................................................................................................................... 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................GATGGACTTTAAGATGGGTTTGTAGCC....................................... 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................ATGGGTTTGTAGCCAGGCGTGGTAG............................ 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................TAGCTTTTCGATGGACTTTAAGATG.................................................. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............TGAGTACAGGACAGAGTGTGTCAaggg................................................................................................................................................................................................................. 27 aggg 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................CAGGCGTGGTAGCGCAAGCC.................... 20 3 0.33 0.33 - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
AACCTAACGGCCTGTGAGTACAGGACAGAGTGTGTCACGGCTGATGGAGTGTAAGTCTGACAAACCAAAAGCGGGACTGGCCGACCGGTTGTATGTGTCCGACAGGTTGTGCTACGTCTGATGCGTCGTGGCCTTGGATATCTCGTCGAGTGACTGATGAAGCCACCGACAGAAATAGCTTTTCGATGGACTTTAAGATGGGTTTGTAGCCAGGCGTGGTAGCGCAAGCCTTTAATCCCAGCACTCGGAG
....................................................((((((..(((.(((...((((((((((((((((.((((........)))).))))).)))).))))..)))....)))..)))....(((.((((.(((.((.....)).))))))))))..............)))))).........................................................
..................................................51...................................................................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
..........................................................................................................................................................TGAAGCCACCGACaga................................................................................ 16 aga 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................CAAGCCTTTAATCCCAGaatt......... 21 aatt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
..........................................................................GACTGGCCGACCGGTTGTATGTGTCCGA.................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................CGCAAGCCTTTAATCCCAgcaa.......... 22 gcaa 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................GTAGCGCAAGCCTTTAATCCCAtacc.......... 26 tacc 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
............................................................................................................................................................................................................................CGCAAGCCTTTAATCCCAtt.......... 20 tt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
......................................................................................................................................................................................................................CGTGGTAGCGCAAGCCTTTAATCCCA.......... 26 7 0.14 0.14 - - 0.14 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................GGTAGCGCAAGCCTTTAATCCCA.......... 23 11 0.09 0.09 - - - - - - - - 0.09 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................TGGTAGCGCAAGCCTTTAATCCC........... 23 12 0.08 0.08 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.08