| Gene: Nalp4c | ID: uc009fan.1_intron_6_0_chr7_6044240_f.3p | SPECIES: mm9 |
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(8) OTHER.mut |
(6) PIWI.ip |
(26) TESTES |
| CGTGGTTGCTGGGAATTGAACTCAGCACCTCTGGAAGAGCAGTCAGTGCTCTTAACGGCTGAGCCATCTCTCCAGCCCAAGACCATGATGTTTTCTGAATCTCTGAGTACTCTCTGCAATTGTAGACATCGCTGGGCTTTGTGAAATGCTTCCTTTTCAGATCAGGGAATAACCACAGTATTGTGATTTTTCTCTTACAGTGTAAGATATTGTCTCATCACCACTAGTGGTTGCCAGGACCTGGCTGAAG ...............................................((((.....(((((((......))).)))).(((((......)))))..........)))).............................................................................................................................................. ...............................................48..............................................................112........................................................................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................GACCATGATGTTTTCTGAATCTCTGAGT.............................................................................................................................................. | 28 | 1 | 25.00 | 25.00 | 8.00 | 5.00 | 4.00 | - | 5.00 | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................AGACCATGATGTTTTCTGAATCTCTGAGT.............................................................................................................................................. | 29 | 1 | 18.00 | 18.00 | 6.00 | 6.00 | 5.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................GACCATGATGTTTTCTGAAT...................................................................................................................................................... | 20 | 1 | 14.00 | 14.00 | 2.00 | 3.00 | 1.00 | - | 5.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................AGACCATGATGTTTTCTGAAT...................................................................................................................................................... | 21 | 1 | 12.00 | 12.00 | 2.00 | 6.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................AGACCATGATGTTTTCTGAATCTCTGAGc.............................................................................................................................................. | 29 | c | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........TGGGAATTGAACTCAGCACCTCTGGAAGAaga................................................................................................................................................................................................................. | 32 | aga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........GGGAATTGAACTCAGCACCTCTGGAtta.................................................................................................................................................................................................................... | 28 | tta | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........GGGAATTGAACTCAGCACCTCTGGAAGAGCAc................................................................................................................................................................................................................ | 32 | c | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........TGGGAATTGAACTCAGCACCTCaga........................................................................................................................................................................................................................ | 25 | aga | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGAATCTCTGAGTACTatc........................................................................................................................................ | 19 | atc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .........TGGGAATTGAACTCAGCACCTCTGGAAGAaa.................................................................................................................................................................................................................. | 31 | aa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ................TGAACTCAGCACCTCTGGAAGAGCAac............................................................................................................................................................................................................... | 27 | ac | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................TGAACTCAGCACCTCTGGAAGAGCAGaaa............................................................................................................................................................................................................. | 29 | aaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................ACCTCTGGAAGAGCAGTCAGTGCcta...................................................................................................................................................................................................... | 26 | cta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ................TGAACTCAGCACCTCTGGAAGAGCAaaa.............................................................................................................................................................................................................. | 28 | aaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................TAACGGCTGAGCCATCTCTCtaga.............................................................................................................................................................................. | 24 | taga | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................TGAACTCAGCACCTCTGGt....................................................................................................................................................................................................................... | 19 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................TGCTCTTAACGGCTGAGCCATCTCTtt................................................................................................................................................................................. | 27 | tt | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........TGGGAATTGAACTCAGCACCTCTGGAg...................................................................................................................................................................................................................... | 27 | g | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........TGGGAATTGAACTCAGCACCTCTGGcaga.................................................................................................................................................................................................................... | 29 | caga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................GAACTCAGCACCTCTGGAAGAGCtgt............................................................................................................................................................................................................... | 26 | tgt | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............ATTGAACTCAGCACCTCTGGAAGtagt................................................................................................................................................................................................................. | 27 | tagt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................ACCATGATGTTTTCTGAAT...................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................CCACTAGTGGTTGCCAGGA........... | 19 | 2 | 0.50 | 0.50 | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................GACCATGATGTTTTCTG......................................................................................................................................................... | 17 | 4 | 0.25 | 0.25 | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................ATGATGTTTTCTGAAT...................................................................................................................................................... | 16 | 7 | 0.14 | 0.14 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CGTGGTTGCTGGGAATTGAACTCAGCACCTCTGGAAGAGCAGTCAGTGCTCTTAACGGCTGAGCCATCTCTCCAGCCCAAGACCATGATGTTTTCTGAATCTCTGAGTACTCTCTGCAATTGTAGACATCGCTGGGCTTTGTGAAATGCTTCCTTTTCAGATCAGGGAATAACCACAGTATTGTGATTTTTCTCTTACAGTGTAAGATATTGTCTCATCACCACTAGTGGTTGCCAGGACCTGGCTGAAG ...............................................((((.....(((((((......))).)))).(((((......)))))..........)))).............................................................................................................................................. ...............................................48..............................................................112........................................................................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................TAACGGCTGAGCCATCTCTCCAGCCCcagg............................................................................................................................................................................ | 30 | cagg | 9.00 | 0.00 | - | - | - | 9.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TTAACGGCTGAGCCATCTCTCCAGCCCcgg............................................................................................................................................................................ | 30 | cgg | 3.00 | 0.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................CGGCTGAGCCATCTCTCCAGCCCat............................................................................................................................................................................ | 25 | at | 2.00 | 0.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................CTTAACGGCTGAGCCATCTCTCCAggct................................................................................................................................................................................ | 28 | ggct | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TTAACGGCTGAGCCATCTCTCCAGCCCcg............................................................................................................................................................................ | 29 | cg | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........AATTGAACTCAGCACCTCTGGAAaga...................................................................................................................................................................................................................... | 26 | aga | 2.00 | 0.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................AGCCATCTCTCCAGCCCaaaa............................................................................................................................................................................ | 21 | aaaa | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................CTTAACGGCTGAGCCAggct........................................................................................................................................................................................ | 20 | ggct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ........................CTCTGGAAGAGCAGTCAGTGCTCTTAcaaa.................................................................................................................................................................................................... | 30 | caaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...........GAATTGAACTCAGCACCTCTGGAAa...................................................................................................................................................................................................................... | 25 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................ACGGCTGAGCCATCTCTCCActca................................................................................................................................................................................ | 24 | ctca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................AACGGCTGAGCCATCTCTCCAGCCCttt............................................................................................................................................................................ | 28 | ttt | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................CGGCTGAGCCATCTCTCCAGCCCata............................................................................................................................................................................ | 26 | ata | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............ATTGAACTCAGCACCTCTGGAAaa...................................................................................................................................................................................................................... | 24 | aa | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TAACGGCTGAGCCATCTCTCCAGCCCcag............................................................................................................................................................................ | 29 | cag | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........GGGAATTGAACTCAGCACCTCTGGAAta...................................................................................................................................................................................................................... | 28 | ta | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........GGAATTGAACTCAGCACCTCTGGAAaaa...................................................................................................................................................................................................................... | 28 | aaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAACGGCTGAGCCATCTCTCCAGCCCc............................................................................................................................................................................ | 27 | c | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........GGGAATTGAACTCAGCACCTCTGGAAt...................................................................................................................................................................................................................... | 27 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................CACCTCTGGAAGAGCAGTagt............................................................................................................................................................................................................... | 21 | agt | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................CCATCTCTCCAGCCCAAGAta........................................................................................................................................................................ | 21 | ta | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........GGAATTGAACTCAGCACCTCTGGAAttt...................................................................................................................................................................................................................... | 28 | ttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................TAACGGCTGAGCCATCTCTCCAGCCCttt............................................................................................................................................................................ | 29 | ttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................CAGCACCTCTGGAAgtgg...................................................................................................................................................................................................................... | 18 | gtgg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................CACCTCTGGAAGAGCAGTCAGTagt........................................................................................................................................................................................................... | 25 | agt | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................CCATCTCTCCAGCCCAAGaaaa......................................................................................................................................................................... | 22 | aaaa | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................GGGCTTTGTGAAATGCTTCCTTTTCAGA......................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...........................CTGGAAGAGCAGTCAGTGCTCTTAtca.................................................................................................................................................................................................... | 27 | tca | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................TTAACGGCTGAGCCATCTCTCCAGCCCcggc............................................................................................................................................................................ | 31 | cggc | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TAACGGCTGAGCCATCTCTCCAGCCCgaa............................................................................................................................................................................ | 29 | gaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .........................................................AGCCATCTCTCCAGCCCaaag............................................................................................................................................................................ | 21 | aaag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................CGGCTGAGCCATCTCTCCAGCCCaa............................................................................................................................................................................ | 25 | aa | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................CTCAGCACCTCTGGAAGAGCAa................................................................................................................................................................................................................. | 22 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................AACGGCTGAGCCATCTCTCCAGCCCcc............................................................................................................................................................................ | 27 | cc | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................GCCATCTCTCCAGCCCAAGACCAT.................................................................................................................................................................... | 24 | 3 | 0.33 | 0.33 | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |