(4)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(3)
PIWI.mut
(26)
TESTES

Sense strand
AGAGCTTGAGAACACCTTTTGAAGAAAACAACGTGGACGTGGCTAGGAAGGTTAGAGAACGAGGAGGCTTTGTAAAGAGTGGGAAAATTTTAAAGGGTAGTGGTTGCAGCTCGGTGGTGGGGGTGGCTTAGCACTTTGAGAGTCTACCTGGGCCAACTGCTTCTGAGCCAAGAGAGCCGAGGGAAGGGATGGCCAATGGAGAGGTGACTCTTACTGGTGTCTCTTTTGTACTCCAGAGAAAGCCCCAAGCCACCTCCGGACCTTCCGTCATGGAAGACTCCTCGCT
..............................................................................................................................(((((....))))).((((.(((.(((...(((((....)))..))...))).)))....))))................................................................................................
...........................................................................................................................124..................................................................193...........................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
.................TTTGAAGAAAACAACGTGGACGTGGCT.................................................................................................................................................................................................................................................. 27 1 25.00 25.00 4.00 5.00 6.00 2.00 - 5.00 2.00 1.00 - - - - - - - - - - - - - - - - - - -
...................TGAAGAAAACAACGTGGACGTGGCTA................................................................................................................................................................................................................................................. 26 1 20.00 20.00 5.00 3.00 4.00 - - 2.00 - 1.00 1.00 - - 4.00 - - - - - - - - - - - - - - -
...........................................TAGGAAGGTTAGAGAACGAGGAGGCTT........................................................................................................................................................................................................................ 27 1 9.00 9.00 1.00 1.00 2.00 1.00 - - 1.00 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - -
..................TTGAAGAAAACAACGTGGACGTGGCT.................................................................................................................................................................................................................................................. 26 1 9.00 9.00 5.00 - 1.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - 1.00
...........................................TAGGAAGGTTAGAGAACGAGGAGGC.......................................................................................................................................................................................................................... 25 1 7.00 7.00 - - - 1.00 2.00 - - - - - - - 2.00 2.00 - - - - - - - - - - - - -
...........................................TAGGAAGGTTAGAGAACGAGGAGGCT......................................................................................................................................................................................................................... 26 1 5.00 5.00 - 1.00 - 2.00 - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - -
.................TTTGAAGAAAACAACGTGGACGTGGC................................................................................................................................................................................................................................................... 26 1 5.00 5.00 2.00 - 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
...................TGAAGAAAACAACGTGGACGTGGCT.................................................................................................................................................................................................................................................. 25 1 4.00 4.00 - - - - - - - 1.00 1.00 1.00 - - 1.00 - - - - - - - - - - - - - -
......................................GTGGCTAGGAAGGTTAGAGAACGAGGAGGC.......................................................................................................................................................................................................................... 30 1 4.00 4.00 - - - - 4.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................TAGAGAACGAGGAGGCTTTGTAAAGA................................................................................................................................................................................................................ 26 1 3.00 3.00 - - - - 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
................TTTTGAAGAAAACAACGTGGACGTGGCT.................................................................................................................................................................................................................................................. 28 1 3.00 3.00 - 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................TAGCACTTTGAGAGTCTACCTGGGCCA................................................................................................................................... 27 1 2.00 2.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...................TGAAGAAAACAACGTGGACGTGGCTAG................................................................................................................................................................................................................................................ 27 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
......................................................................TGTAAAGAGTGGGAAAATTTTAAAGGG............................................................................................................................................................................................. 27 1 2.00 2.00 - - - - - - - - - - - - - - - 1.00 - - - 1.00 - - - - - - -
......................................................GAGAACGAGGAGGCTTTGTAAAGAGT.............................................................................................................................................................................................................. 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TTCTGAGCCAAGAGAGCCG........................................................................................................... 19 1 2.00 2.00 - - - - - - - - - - - - - - 2.00 - - - - - - - - - - - -
.......................GAAAACAACGTGGACGTGGCTAGGA.............................................................................................................................................................................................................................................. 25 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................GAAAACAACGTGGACGTGGCTAGGAA............................................................................................................................................................................................................................................. 26 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................TGAGCCAAGAGAGCCGAGGGAAGGGA................................................................................................. 26 1 2.00 2.00 - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................TAAAGAGTGGGAAAATTTTAAAGGGT............................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
............................................AGGAAGGTTAGAGAACGAGGAGGCT......................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................CTAGGAAGGTTAGAGAACGAGGAGGCTT........................................................................................................................................................................................................................ 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.....................................CGTGGCTAGGAAGGTTAGAGAA................................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...................TGAAGAAAACAACGTGGACGTGGCTAt................................................................................................................................................................................................................................................ 27 t 1.00 20.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TTTGAGAGTCTACCTGGGCCAACTGCTTC........................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...........................................TAGGAAGGTTAGAGAACGAGGAGGattt....................................................................................................................................................................................................................... 28 attt 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................TGAAGAAAACAACGTGGACGTGGC................................................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................AGGAAGGTTAGAGAACGAGGAGGCTT........................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................AAGCCCCAAGCCACCTCCGGACCTTCCGTC................. 30 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
......................................................................................................................................................................................................................................................................TTCCGTCATGGAAGACTCCTCGC. 23 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TTCTGAGCCAAGAGAGCCGAGGGAAG.................................................................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................TGAAGAAAACAACGTGGACGTGGCTt................................................................................................................................................................................................................................................. 26 t 1.00 4.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................TAGCACTTTGAGAGTCTACCTGGGC..................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................GAAAACAACGTGGACGTGGCTAGGAAG............................................................................................................................................................................................................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................TTTGAAGAAAACAACGTGGACGTGGtt.................................................................................................................................................................................................................................................. 27 tt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
............................................AGGAAGGTTAGAGAACGAGGAGGata........................................................................................................................................................................................................................ 26 ata 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................GCTAGGAAGGTTAGAGAACGAG............................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.............................................................................................................................................................................................TGGCCAATGGAGAGGTGACTCTTACT....................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
........................................................................................................................................................CCAACTGCTTCTGAGCCAAGAGAGCCGAG......................................................................................................... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................AAGAAAACAACGTGGACGTGGCTAG................................................................................................................................................................................................................................................ 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TTTGAGAGTCTACCTGGGCCAACTGCTT............................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...........................................TAGGAAGGTTAGAGAACGAGGAGGCTTT....................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................AGGAAGGTTAGAGAACGAGGAGGCTa........................................................................................................................................................................................................................ 26 a 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................ACTGCTTCTGAGCCAAGAGAGCCGAGG........................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
......................AGAAAACAACGTGGACGTGGCTAGG............................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................TGAGCCAAGAGAGCCGAGGGAAG.................................................................................................... 23 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TGCTTCTGAGCCAAGAGAGCCGAGGGc...................................................................................................... 27 c 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.....................AAGAAAACAACGTGGACGTGGCTAGG............................................................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................TAGCACTTTGAGAGTCTACCTGGGCCAA.................................................................................................................................. 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..........................AACAACGTGGACGTGGCTAGGAAG............................................................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.................................................................................................................................................................TCTGAGCCAAGAGAGCCGAGGGAAGGGA................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.................................................................................................................................AGCACTTTGAGAGTCTACCTGGGCCAACTGa.............................................................................................................................. 31 a 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................ATGGAGAGGTGACTCTTACTGGTGcc................................................................. 26 cc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
......................................................GAGAACGAGGAGGCTTTGTAAAGAG............................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TGAGAGTCTACCTGGGCCAACTGg.............................................................................................................................. 24 g 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
......................................................................................................................................TTTGAGAGTCTACCTGGGCCAAC................................................................................................................................. 23 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................AGGAAGGTTAGAGAACGAGGAGGCTTTG...................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................................................................................................TGAGCCAAGAGAGCCGAGGGAAGGGAT................................................................................................ 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TTCTGAGCCAAGAGAGCCGAGGGAA..................................................................................................... 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.......................GAAAACAACGTGGACGTGGCTAGG............................................................................................................................................................................................................................................... 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................AACTGCTTCTGAGCCAAGAGAGCCGA.......................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..........AACACCTTTTGAAGA..................................................................................................................................................................................................................................................................... 15 6 0.17 0.17 - - - - - - - - - - - - - - - - - - - - - 0.17 - - - - -

Antisense strand
AGAGCTTGAGAACACCTTTTGAAGAAAACAACGTGGACGTGGCTAGGAAGGTTAGAGAACGAGGAGGCTTTGTAAAGAGTGGGAAAATTTTAAAGGGTAGTGGTTGCAGCTCGGTGGTGGGGGTGGCTTAGCACTTTGAGAGTCTACCTGGGCCAACTGCTTCTGAGCCAAGAGAGCCGAGGGAAGGGATGGCCAATGGAGAGGTGACTCTTACTGGTGTCTCTTTTGTACTCCAGAGAAAGCCCCAAGCCACCTCCGGACCTTCCGTCATGGAAGACTCCTCGCT
..............................................................................................................................(((((....))))).((((.(((.(((...(((((....)))..))...))).)))....))))................................................................................................
...........................................................................................................................124..................................................................193...........................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
...........................................................GGAGGCTTTGTAAAGAccg................................................................................................................................................................................................................ 19 ccg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.......................................................................................................................................................................................................................................................AGCCACCTCCGGACCTTCCGTCATGGAAGA......... 30 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -