| Gene: 5930416I19Rik | ID: uc009edj.1_intron_0_0_chr6_128308212_r.3p | SPECIES: mm9 |
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(3) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(1) PIWI.mut |
(18) TESTES |
| GAGCGATTGGATAGCTGGCCCAGGTCTCTTGCCTTCTTGTCATACCACATAGCTGGATGGGTGTCTGTCCTGTATTGTAGCGAGTCCTCACAATTCTGGACAAAAATAAAGGATCAGACACATTTACTCTAGCTGCTTTGCAGCTGGCTCGCCACCACCACCATCCTTTTTTTTTTTTTTTTTTTTTTTTTTATGCACAGGTGTCACCCCAGTTTGATAGAGCAGCGGAAAGCCGGTTTCTGATACACCG .....................................................................................................(((((.(((((((..............((((((((...))))))))...............))))))).)))))........................................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................TGGACAAAAATAAAGGATCAGACACATT.............................................................................................................................. | 28 | 1 | 23.00 | 23.00 | 9.00 | - | - | 1.00 | - | 2.00 | 5.00 | - | - | 3.00 | 3.00 | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................TGATAGAGCAGCGGAAAGCCGGTTT........... | 25 | 1 | 14.00 | 14.00 | - | 4.00 | - | 1.00 | 2.00 | - | 1.00 | 2.00 | 2.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - |
| ..........................................................................................................TAAAGGATCAGACACATTTACTCTAGC..................................................................................................................... | 27 | 1 | 13.00 | 13.00 | - | 1.00 | 6.00 | 5.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................TGATAGAGCAGCGGAAAGCCGGTTTC.......... | 26 | 1 | 5.00 | 5.00 | 1.00 | - | 1.00 | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................TGGACAAAAATAAAGGATCAGACACAT............................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................TAAAGGATCAGACACATTTACTCTAGCT.................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................TAAAGGATCAGACACATTTACTCTAGCTGC.................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................TGATAGAGCAGCGGAAAGCCGGgttc.......... | 26 | gttc | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................TGGACAAAAATAAAGGATCAGACACATTTAC........................................................................................................................... | 31 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................TTGTCATACCACATAGCTGGATGGGTGTC......................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................TTTGATAGAGCAGCGGAAAGCCGGTT............ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................CAAAAATAAAGGATCAGACACATTTAC........................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................TGGACAAAAATAAAGGATCAGACACATTTA............................................................................................................................ | 30 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TAGAGCAGCGGAAAGCCGGTTTCT......... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .......TGGATAGCTGGCCCAGGTCTCTTGCCTTC...................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...........................................................................................................................................................................................TTTTTATGCACAGGTGTCACCCCAGTT.................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................................CACATTTACTCTAGCTGCTctg.............................................................................................................. | 22 | ctg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..............................................................................................................................................................................................................CCCCAGTTTGATAGAGCAGCGGAAAG.................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................TCATACCACATAGCTGGATGGGTGTC......................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................TGATAGAGCAGCGGAAAGCCGGTTTCTGA....... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................TTCTGGACAAAAATAAAGGATCAGACACA................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................GTTTGATAGAGCAGCGGAAAGCCGGT............. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................TCATACCACATAGCTGGATGGGTGTCT........................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........................................TACCACATAGCTGGATGGGTGTCTGT...................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................TTATGCACAGGTGTCACttat....................................... | 21 | ttat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..........................................TACCACATAGCTGGATGGGTGTCTG....................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| GAGCGATTGGATAGCTGGCCCAGGTCTCTTGCCTTCTTGTCATACCACATAGCTGGATGGGTGTCTGTCCTGTATTGTAGCGAGTCCTCACAATTCTGGACAAAAATAAAGGATCAGACACATTTACTCTAGCTGCTTTGCAGCTGGCTCGCCACCACCACCATCCTTTTTTTTTTTTTTTTTTTTTTTTTTATGCACAGGTGTCACCCCAGTTTGATAGAGCAGCGGAAAGCCGGTTTCTGATACACCG .....................................................................................................(((((.(((((((..............((((((((...))))))))...............))))))).)))))........................................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................ATCCTTTTTTTTTTTTTTTTTTTTTTTTTTagcc.......................................................... | 34 | agcc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .................GCCCAGGTCTCTTGCCTTCTTGTCA................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TCTCTTGCCTTCTTGTCATACCACA......................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTATtatg........................................................ | 32 | tatg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ................................................................................................................................................................CCATCCTTTTTTTTTTTTTTTTTTTTTTTTTT.......................................................... | 32 | 17 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 | - | - | - | - | - | - |