| Gene: Ift122 | ID: uc009djg.1_intron_23_0_chr6_115873450_f | SPECIES: mm9 |
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(2) OTHER.mut |
(4) PIWI.ip |
(14) TESTES |
| TTGAGCTGGGCACCCTGACCATCCGCTCCAAGCCCTTCCATGACAGTGAGGTAAGGGCCTGCGTGCCTTTGAACCTAGTCTGGTTCTGTTGGAAGATGGCTGCTGTGGCCTTGGCTCCCCTGCCAGTGCACTGGGATAGACTGGGTTCTTCCTAGCTGTGCCTTAGGCTTTCAGTGCCTCAGTTTCCTGCTCTGTCAGGTGGGTATGTATAAACCCTTACCCACAGGTGGTAGGGGGTACTTGTGCAGCATAAGTGATGTATCTGACACAGTGCCTAGACCTGGCAAGTGGCAGGAGTTGACAGTGGATACAGTTGTTCCTTTGAAGATAGCGTCCTGCTAAGGCCTGGCTTGGAGCAGGTGTCTGGGCTAGTGAGCCTCAGGTGTAGTCTTAGTTGGCCAGCCTCTCCACAGCATGCCATCTTTGACCCTGGGAGGAGATGGAGGTATGCACACTTCTGGTTCAGCCTGGGCAGACGTGACCTTGCTCTATAGGAGCTGGTACCCTTGTGCTACCGCTGTTCTACCAACAACCCGCTGCTGAA ............................................................................................................................................................................................................................................................................................................................................................................................................(((.((((........(((((((((((((..((...)).))))))...)))))))........))))..))).((((((........))))))....................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................395................................................................................................494................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................TAGTCTGGTTCTGTTGGAAGATGGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 5.00 | 5.00 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | 1.00 | - | - |
| ...........................................................................TAGTCTGGTTCTGTTGGAAGATGGCTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 4.00 | 4.00 | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................TAGTCTGGTTCTGTTGGAAGATGGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ................................................................................TGGTTCTGTTGGAAGATGGCTGCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGTTCAGCCTGGGCAca.................................................................... | 21 | ca | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| ....................................................................................TCTGTTGGAAGATGGCTGCTGTGGCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................TGGCAAGTGGCAGGAGcgt.................................................................................................................................................................................................................................................... | 19 | cgt | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGTTCAGCCTGGGCAGACGTGACC............................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................AAGTGATGTATCTGACACAGTGCCTAGACC....................................................................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................TAGTCTGGTTCTGTTGGAAGATGGCTt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | t | 1.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................TACAGTTGTTCCTTTGAAGATAGCGTC................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................AGTCTGGTTCTGTTGGAAGATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTACCGCTGTTCTACCAACAAC........... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| TTGAGCTGGGCACCCTGACCATCCGCTCCAAGCCCTTCCATGACAGTGAGGTAAGGGCCTGCGTGCCTTTGAACCTAGTCTGGTTCTGTTGGAAGATGGCTGCTGTGGCCTTGGCTCCCCTGCCAGTGCACTGGGATAGACTGGGTTCTTCCTAGCTGTGCCTTAGGCTTTCAGTGCCTCAGTTTCCTGCTCTGTCAGGTGGGTATGTATAAACCCTTACCCACAGGTGGTAGGGGGTACTTGTGCAGCATAAGTGATGTATCTGACACAGTGCCTAGACCTGGCAAGTGGCAGGAGTTGACAGTGGATACAGTTGTTCCTTTGAAGATAGCGTCCTGCTAAGGCCTGGCTTGGAGCAGGTGTCTGGGCTAGTGAGCCTCAGGTGTAGTCTTAGTTGGCCAGCCTCTCCACAGCATGCCATCTTTGACCCTGGGAGGAGATGGAGGTATGCACACTTCTGGTTCAGCCTGGGCAGACGTGACCTTGCTCTATAGGAGCTGGTACCCTTGTGCTACCGCTGTTCTACCAACAACCCGCTGCTGAA ............................................................................................................................................................................................................................................................................................................................................................................................................(((.((((........(((((((((((((..((...)).))))))...)))))))........))))..))).((((((........))))))....................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................395................................................................................................494................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTATGCACACTTagca....................................................................................... | 19 | agca | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAACAACCCGCaa....... | 16 | aa | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAACAACCCGcc........ | 15 | cc | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCGCTGTTCTctgg.................... | 18 | ctgg | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAACAACCCGcaaa........ | 17 | caaa | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAACAACCCGaaaa........ | 17 | aaaa | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGCCTGGGCga....................................................................... | 15 | ga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACAACCCGCacc....... | 15 | acc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |