| Gene: Lrig1 | ID: uc009czu.1_intron_1_0_chr6_94556358_r.3p | SPECIES: mm9 |
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(4) OTHER.mut |
(2) PIWI.ip |
(1) PIWI.mut |
(15) TESTES |
| AAATTAATTTTACACGTATACTTAGGCACACAAGACTAAGACATGGTTGGTCTAGCTCCTCTCCACATACACATTCCAGGGGGTGGGGAGGGGAGAGACAGGGTGGTTATGAAGGCAGTGGTAAGCTGGACTCATCTTCCAATAGTGCCTCTGAGAGGGAATGGAGACTCAGTTGACCTCTGGTTCTCTTCTTCCCTCAGCACACAGTGGCTCTGCTGTATGTAGTGACTGCAGTACTGACACAGCCTAC ..........................................................................................................................................................(((((((.(((((..(((.......)))..)))))..))))))).................................................... ....................................................................................................................................................149................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGAC......................................................................... | 24 | 1 | 12.00 | 12.00 | 2.00 | 3.00 | 5.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGA.......................................................................... | 23 | 1 | 8.00 | 8.00 | 3.00 | 1.00 | - | - | - | - | 1.00 | 1.00 | 1.00 | - | 1.00 | - | - | - | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACC........................................................................ | 25 | 1 | 8.00 | 8.00 | 5.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGT............................................................................. | 20 | 1 | 3.00 | 3.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACa........................................................................ | 25 | a | 3.00 | 12.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACCT....................................................................... | 26 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGt................................................. | 21 | t | 2.00 | 0.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................TCTGGTTCTCTTCTTCCCTCAGa................................................. | 23 | a | 2.00 | 0.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................CTGGTTCTCTTCTTCCCTCAGa................................................. | 22 | a | 2.00 | 2.00 | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................CTGGTTCTCTTCTTCCCTCAG.................................................. | 21 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTG........................................................................... | 22 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTt........................................................................... | 22 | t | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTT............................................................................ | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................CTGAGAGGGAATGGAGACTCAGTTGAC......................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..................................................................................................................................................................................TCTGGTTCTCTTCTTCCCTCAGt................................................. | 23 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................AGTGGCTCTGCTGTATGTAGTGACTGC.................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGAt......................................................................... | 24 | t | 1.00 | 8.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................GAGAGGGAATGGAGACTCAG.............................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ........................................................................................................................................................GAGAGGGAATGGAGACTCAGa............................................................................. | 21 | a | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACCgaat.................................................................... | 29 | gaat | 1.00 | 8.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTa........................................................................... | 22 | a | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACCTCT..................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGAact....................................................................... | 26 | act | 1.00 | 8.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................................................................CTGAGAGGGAATGGAGA................................................................................... | 17 | 3 | 0.33 | 0.33 | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - |
| AAATTAATTTTACACGTATACTTAGGCACACAAGACTAAGACATGGTTGGTCTAGCTCCTCTCCACATACACATTCCAGGGGGTGGGGAGGGGAGAGACAGGGTGGTTATGAAGGCAGTGGTAAGCTGGACTCATCTTCCAATAGTGCCTCTGAGAGGGAATGGAGACTCAGTTGACCTCTGGTTCTCTTCTTCCCTCAGCACACAGTGGCTCTGCTGTATGTAGTGACTGCAGTACTGACACAGCCTAC ..........................................................................................................................................................(((((((.(((((..(((.......)))..)))))..))))))).................................................... ....................................................................................................................................................149................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) |
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| ...............................................................................................................................GGACTCATCTTCCAATAGTGCCTCTGA................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |