(2)
OTHER.mut
(4)
PIWI.ip
(2)
PIWI.mut
(20)
TESTES

Sense strand
TACTGTGTTAATGTGAGTGTTCCCAGCTAGTGTGGCCGTGCTAGGCTAAGCTCCAGTTTCTCATGCATATTGGGGAATATTACTTAGTAGCCTTCTAAAAGGAAGGAAAGACACTGTAAATTTCTGTGGGATTTCACAATGGATGTGATGGAATGAGCGAACTGCGGGCAGTCAGGAACATGACCATTTCCTGTCCCTAGGTTATTCGCAGGTGTCCTCCCGAGGATGGCAGCAATCAGCATGGGCGGCT
..........................................................................................((((((....))))))...(((.(((((...(((.((......(((((.....)))))........))))).)))))...))).............................................................................
..........................................................................................91.....................................................................................178......................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR037901(GSM510437)
testes_rep2. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
....................................................................................................................................................TGGAATGAGCGAACTGCGGGCAGTCA............................................................................ 26 1 52.00 52.00 17.00 13.00 2.00 - 10.00 6.00 - - 1.00 - 3.00 - - - - - - - - -
.................................................................................................................................................TGATGGAATGAGCGAACTGCGGGCAG............................................................................... 26 1 35.00 35.00 5.00 10.00 4.00 2.00 6.00 6.00 - - 1.00 - 1.00 - - - - - - - - -
....................................................................................................................................................TGGAATGAGCGAACTGCGGGCAGTCAG........................................................................... 27 1 32.00 32.00 10.00 11.00 1.00 2.00 3.00 5.00 - - - - - - - - - - - - - -
...........................................................................................................................................TGGATGTGATGGAATGAGCGAACTGCGG................................................................................... 28 1 15.00 15.00 3.00 5.00 2.00 1.00 - 2.00 1.00 - - - 1.00 - - - - - - - - -
...............................................................................................................................................TGTGATGGAATGAGCGAACTGCGGGC................................................................................. 26 1 14.00 14.00 3.00 2.00 2.00 4.00 - 1.00 - - - 1.00 - 1.00 - - - - - - - -
.................................................................................................................................................TGATGGAATGAGCGAACTGCGGGCAGT.............................................................................. 27 1 13.00 13.00 4.00 2.00 2.00 - 3.00 1.00 1.00 - - - - - - - - - - - - -
...............................................................................................................................................TGTGATGGAATGAGCGAACTGCGGGCA................................................................................ 27 1 11.00 11.00 4.00 2.00 1.00 1.00 - 1.00 - - - - 1.00 - - 1.00 - - - - - -
...........................................................................................................................................TGGATGTGATGGAATGAGCGAACTGC..................................................................................... 26 1 8.00 8.00 - - 5.00 1.00 - - - - - - - 1.00 - - - - - - 1.00 -
....................................................................................................................................................TGGAATGAGCGAACTGCGGGCAGTC............................................................................. 25 1 7.00 7.00 1.00 1.00 2.00 3.00 - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TTCGCAGGTGTCCTCCCGAGGATGGCAGC................. 29 1 7.00 7.00 - - - - - - - 6.00 - - - - - - - - 1.00 - - -
.................................................................................................................................................TGATGGAATGAGCGAACTGCGGGCA................................................................................ 25 1 6.00 6.00 4.00 - - - 1.00 - - - - - 1.00 - - - - - - - - -
...............................................................................................TAAAAGGAAGGAAAGACACTGTAAATT................................................................................................................................ 27 1 5.00 5.00 - - 2.00 1.00 - - 1.00 - - - - - 1.00 - - - - - - -
...............................................................................................................................................TGTGATGGAATGAGCGAACTGCGGGCAGTC............................................................................. 30 1 4.00 4.00 - - - 3.00 - - - - - - - 1.00 - - - - - - - -
...................................................................................................................................TTTCACAATGGATGTGATGGAATGAGC............................................................................................ 27 1 4.00 4.00 - - - 1.00 - - 2.00 - - - - 1.00 - - - - - - - -
.........................................................................................................................................................TGAGCGAACTGCGGGCAGTCAGGAAC....................................................................... 26 1 3.00 3.00 2.00 - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................TCCCGAGGATGGCAGCAATCAGCATG....... 26 1 3.00 3.00 2.00 1.00 - - - - - - - - - - - - - - - - - -
.................................................................................................................................................TGATGGAATGAGCGAACTGCGGGCAGTC............................................................................. 28 1 3.00 3.00 - - - - - - 1.00 - 1.00 1.00 - - - - - - - - - -
...............................................................................................................................................TGTGATGGAATGAGCGAACTGCGGG.................................................................................. 25 1 3.00 3.00 1.00 - - - - - 1.00 - - - 1.00 - - - - - - - - -
........TAATGTGAGTGTTCCCAGCTAGTGTG........................................................................................................................................................................................................................ 26 1 2.00 2.00 - - - - - - - - - 1.00 - - 1.00 - - - - - - -
.....................................................................................................................................................................................................TAGGTTATTCGCAGGTGTCCTCCCG............................ 25 1 2.00 2.00 - - - - - - - - - - - - 2.00 - - - - - - -
..................................................................................................................TGTAAATTTCTGTGGGATTTCACAATGG............................................................................................................ 28 1 2.00 2.00 - - - - 1.00 - 1.00 - - - - - - - - - - - - -
..........................................................................................................................................................................................................................CCCGAGGATGGCAGCAATCAGCATGG...... 26 1 2.00 2.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - -
....................................................................................................................................TTCACAATGGATGTGATGGAATGAGC............................................................................................ 26 1 2.00 2.00 - - - 1.00 - - - - - 1.00 - - - - - - - - - -
.......................................................................................................................................................................................CCATTTCCTGTCCCTAGGTTATTCGCA........................................ 27 1 2.00 2.00 - - - - - - - - - - - - - - 2.00 - - - - -
...............................................................................................TAAAAGGAAGGAAAGACACTGTAAAT................................................................................................................................. 26 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - -
...................................................................................................AGGAAGGAAAGACACTGTAAATTTCTGT........................................................................................................................... 28 1 2.00 2.00 - - 1.00 - - - 1.00 - - - - - - - - - - - - -
.........................................................................................................................TTCTGTGGGATTTCACAATGGATGTG....................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................AGGATGGCAGCAATCAGCATGGGCGGC. 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - -
...........................................................................................................................................TGGATGTGATGGAATGAGCGAACTGCGGG.................................................................................. 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - -
............................................................................................................................TGTGGGATTTCACAATGGATGTGATGGA.................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - -
...........................................................................................................................................TGGATGTGATGGAATGAGCGAACTGCGa................................................................................... 28 a 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - -
..........................................................................................................AAAGACACTGTAAATTTCTGTGGGATTT.................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................AGGAAGGAAAGACACTGTAAATTTCTtt........................................................................................................................... 28 tt 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - -
.....................................................................................................................................TCACAATGGATGTGATGGAATGAGCG........................................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - -
..........................................................................................................................................ATGGATGTGATGGAATGAGCGAACTGC..................................................................................... 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - -
............................................................................................................................................................................................................................CGAGGATGGCAGCAATCAGCATGGGCG... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................................................................TGGAATGAGCGAACTGCGGGCAGTCAGGAAC....................................................................... 31 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
...........................................................................................................................................TGGATGTGATGGAATGAGCGAACTGCG.................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
...............................................................................................TAAAAGGAAGGAAAGACACTGTAAATTT............................................................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
..................................................................................................AAGGAAGGAAAGACACTGTAAATTTCTGT........................................................................................................................... 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
........................................................................................................................TTTCTGTGGGATTTCACAATGGATGTG....................................................................................................... 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - -
...........................................................................................................AAGACACTGTAAATTTCTGTGGGATTTC................................................................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - -
....................................................................................................................................................TGGAATGAGCGAACTGCGGGCAGTCt............................................................................ 26 t 1.00 7.00 - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................TGCATATTGGGGAATATTACTTAGTAG................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................................................................................GATGTGATGGAATGAGCGAACTGCGG................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
.......................................................................................................................................ACAATGGATGTGATGGAATGAGCGAA......................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................GGAAGGAAAGACACTGTAAATTTCTGTG.......................................................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TTCCTGTCCCTAGGTTATTCGCAGGT..................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................TAAAAGGAAGGAAAGACACTGTAA................................................................................................................................... 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
...............................................................TGCATATTGGGGAATATTACTTAGTAtc............................................................................................................................................................... 28 tc 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - -
....................................................................................................................TAAATTTCTGTGGGATTTCACAATGG............................................................................................................ 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
....................................................................................................................................................TGGAATGAGCGAACTGCGGGCAGTCAt........................................................................... 27 t 1.00 52.00 1.00 - - - - - - - - - - - - - - - - - - -
...........TGTGAGTGTTCCCAGCTAGTGTGGCCt.................................................................................................................................................................................................................... 27 t 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - -
.........................................................................................................................................................TGAGCGAACTGCGGGCAGTCAGGAA........................................................................ 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - -
.........................................................................................................................................................................................................TTATTCGCAGGTGTCCTCCCGAGGA........................ 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - -
.....TGTTAATGTGAGTGTTCCCAGCTAGTGTG........................................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - -
...............................................................TGCATATTGGGGAATATTACTTAGTA................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - -
...............................................................................................................................................TGTGATGGAATGAGCGAACTGCGGaca................................................................................ 27 aca 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................CTCCCGAGGATGGCAGCAATCAGCATG....... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................TCTAAAAGGAAGGAAAGACACTGTA.................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - -
............................................................................................................................................................................................................................CGAGGATGGCAGCAATCAGCATGGGCGt.. 28 t 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................................TAAATTTCTGTGGGATTTCACAAT.............................................................................................................. 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
................................................................................................................................................GTGATGGAATGAGCGAACTGCGGGCAGT.............................................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
.........................GCTAGTGTGGCCGagcg................................................................................................................................................................................................................ 17 agcg 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - -
...............................................................TGCATATTGGGGAATATTACTTAGTAGC............................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - -
................................................................................................................................................GTGATGGAATGAGCGAACTGCGGGC................................................................................. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................TGCATATTGGGGAATATTACTTAGT.................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - -
....................................................................................................................................................................................TGACCATTTCCTGTCCCTAGGTTATTCGCt........................................ 30 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - -
....................................................................................................................................................................CGGGCAGTCAGGAACATGACCATTTC............................................................ 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - -
.............................................................................................................................................................................................................................GAGGATGGCAGCAATCAGCATGGGCGG.. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................TGAGCGAACTGCGGGCAGTCAGGA......................................................................... 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
......................................TGCTAGGCTAAGCTCCAGTTTCTC............................................................................................................................................................................................ 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................................................................................................TGGATGTGATGGAATGAGCGAACT....................................................................................... 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................................................................................AATGGATGTGATGGAATGAGCGAAC........................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - -
..................................................................................................................................................................................................................................TGGCAGCAATCAGCATGGGCGGCTttt 27 ttt 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TTCGCAGGTGTCCTCCCGAGGATGGgagg................. 29 gagg 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - -
..................................................................................................................................................................................................................................TGGCAGCAATCAGCATGGGCGGCTgc 26 gc 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - -
...............................................................................................................................................................AACTGCGGGCAGTCAGGAACATGACC................................................................. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................TCCCGAGGATGGCAGCAATCAGCATGG...... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................AAAGACACTGTAAATTTCTGTGGGATT..................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TTCGCAGGTGTCCTCCCGAGGATGGCAG.................. 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - -
.............................................................................................................................................GATGTGATGGAATGAGCGAACTGCGGGC................................................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
..................................................................................................................TGTAAATTTCTGTGGGATTTCACAAgg............................................................................................................. 27 gg 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TTCGCAGGTGTCCTCCCGAGGATGGCA................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - -
.....TGTTAATGTGAGTGTTCCCAGCTAGT........................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - -
....................................................................................................................................................TGGAATGAGCGAACTGCGGGCAGTCAGt.......................................................................... 28 t 1.00 32.00 - - - - 1.00 - - - - - - - - - - - - - - -

Antisense strand
TACTGTGTTAATGTGAGTGTTCCCAGCTAGTGTGGCCGTGCTAGGCTAAGCTCCAGTTTCTCATGCATATTGGGGAATATTACTTAGTAGCCTTCTAAAAGGAAGGAAAGACACTGTAAATTTCTGTGGGATTTCACAATGGATGTGATGGAATGAGCGAACTGCGGGCAGTCAGGAACATGACCATTTCCTGTCCCTAGGTTATTCGCAGGTGTCCTCCCGAGGATGGCAGCAATCAGCATGGGCGGCT
..........................................................................................((((((....))))))...(((.(((((...(((.((......(((((.....)))))........))))).)))))...))).............................................................................
..........................................................................................91.....................................................................................178......................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR037901(GSM510437)
testes_rep2. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
................................................................................TAGTAGCCTTCTAAAAtaga...................................................................................................................................................... 20 taga 2.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - 1.00
....................................TGCTAGGCTAAGCTCCAGTTTCTCAtg........................................................................................................................................................................................... 27 tg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................CCATTTCCTGTCCCTAG.................................................. 17 3 0.33 0.33 - - - - - - - - - - - - - 0.33 - - - - - -