(4)
OTHER.mut
(8)
PIWI.ip
(2)
PIWI.mut
(27)
TESTES

Sense strand
CTTTTGCCAAGTGTTCGTTCACGCCATTGTTTTTAAAACTCCTCACTGCACTGCTGCCAGCCTCCCCACTGAGCCCATTCGAGCCCCATACCTGGCAGACACATGGGCCAGCCCCAGCTCTGGGCAGTGGCAGTGGCAGGTGGCAGTGGCACCAGGCCTGGTGTGCGTGTCTAACCTCTGGTATTGCATGTTCTGGGCAGGGAAGCGAGGGCGTCGCAGCAGTGCGGGATCGCTAGAGAGCAATGTGGAA
.................................................................((.(((.((((((((..(((........))).))...))))))))).(((.((((.(((((...((((((.((((.((....(((((((.((...)).)).)))))...)))))).)))))).))))).)))).)))......))........................................
................................................................65...............................................................................................................................................210......................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
mjTestesWT2()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
..................................................................................................................................................................................TGGTATTGCATGTTCTGGGCAGGGAAGC............................................ 28 1 16.00 16.00 4.00 4.00 2.00 2.00 1.00 - 1.00 - - - - - - 1.00 - 1.00 - - - - - - - - - - -
..................................................................................................................................................................................TGGTATTGCATGTTCTGGGCAGGGAA.............................................. 26 1 13.00 13.00 3.00 4.00 1.00 - 2.00 - 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TAACCTCTGGTATTGCATGTTCTGGGC.................................................... 27 1 10.00 10.00 - 1.00 6.00 1.00 - - - - - 2.00 - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................TTGCATGTTCTGGGCAGGGAAGCGAGG........................................ 27 1 10.00 10.00 4.00 2.00 1.00 - 1.00 - - 1.00 - - - - - - - 1.00 - - - - - - - - - - -
............................................................................................................................................................................................TGTTCTGGGCAGGGAAGCGAGGGCGT.................................... 26 1 9.00 9.00 2.00 2.00 - - 2.00 - - 1.00 - - - - - - - - - - - 1.00 - - - 1.00 - - -
.......................................................................................................................................................................................TTGCATGTTCTGGGCAGGGAAGCGAG......................................... 26 1 5.00 5.00 2.00 1.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................TGGGCAGTGGCAGTGGCAGGTGGCA......................................................................................................... 25 1 5.00 5.00 - - - - - - - - 5.00 - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGGTATTGCATGTTCTGGGCAGGGAAG............................................. 27 1 5.00 5.00 2.00 - - - 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................TGCATGTTCTGGGCAGGGAAGCGAGG........................................ 26 1 5.00 5.00 3.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................TCTGGGCAGTGGCAGTGG.................................................................................................................. 18 2 4.00 4.00 - - - - - 4.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGGTATTGCATGTTCTGGGCAGGGA............................................... 25 1 4.00 4.00 1.00 - 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
....TGCCAAGTGTTCGTTCACGCCATTGTT........................................................................................................................................................................................................................... 27 1 3.00 3.00 - - - - - - 2.00 - - - - - 1.00 - - - - - - - - - - - - - -
......................................................................................................................TCTGGGCAGTGGCAGTGGCAGGTGaa.......................................................................................................... 26 aa 3.00 0.00 - - - - - 3.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................TGAGCCCATTCGAGCCCCATACCTGGCA......................................................................................................................................................... 28 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................TGAGCCCATTCGAGCCCCATACCTGGCAGA....................................................................................................................................................... 30 1 2.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TAACCTCTGGTATTGCATGTTCTGG...................................................... 25 1 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - 1.00 - -
.......................................................................................................................................................................................TTGCATGTTCTGGGCAGGGAAGCGA.......................................... 25 1 2.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................TCTAACCTCTGGTATTGCATGTTCTGG...................................................... 27 1 2.00 2.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................TTCGAGCCCCATACCTGGCAGACACATG................................................................................................................................................. 28 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..............TCGTTCACGCCATTGTTTTTAAAACTCC................................................................................................................................................................................................................ 28 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - -
................................................................................................................................................................................TCTGGTATTGCATGTTCTGGGCAGGG................................................ 26 1 2.00 2.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................TCTAACCTCTGGTATTGCATGTTCTG....................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................TGCGTGTCTAACCTCTGGTATTGCATG............................................................ 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................TTGCATGTTCTGGGCAGGGAAGCGAGGGC...................................... 29 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..............................................................................................................................................................TGGTGTGCGTGTCTAACCTCTGGTATTGC............................................................... 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................GGGCAGTGGCAGTGGagc............................................................................................................... 18 agc 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
...........................................................................................................................................................................................ATGTTCTGGGCAGGGAAGCGAGGGC...................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TAACCTCTGGTATTGCATGTTCTGGG..................................................... 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................CGGGATCGCTAGAGAGCAATGTGGAA 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
............................................................................................TGGCAGACACATGGGCCAGCCCCAGCT................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................CAGCAGTGCGGGATCGCTAGAGAGC......... 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
................................................................................................................................................................................TCTGGTATTGCATGTTCTGGGCAGG................................................. 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................TGAGCCCATTCGAGCCCCATACCTtgc.......................................................................................................................................................... 27 tgc 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..TTTGCCAAGTGTTCGTTCACGCCATT.............................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..............................................................................................................................................................................................................................TGCGGGATCGCTAGAGAGCAATGTGGA. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
............................................................................................................................................................................................TGTTCTGGGCAGGGAAGCGAGGGCGTC................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
........................................................................................................................................................CAGGCCTGGTGTGCGTGTCTAACC.......................................................................... 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TCGCAGCAGTGCGGGATCGCTAGAGA........... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................CAGTGCGGGATCGCTAGAGAGCAAT...... 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.........................................................................................................................................................................TCTAACCTCTGGTATTGCATGTTCTGt...................................................... 27 t 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TGCGGGATCGCTAGAGAGCAATGTGG.. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................TTGCATGTTCTGGGCAGGGAAGCGAGt........................................ 27 t 1.00 5.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TGGTGTGCGTGTCTAACCTCTGGTATT................................................................. 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TGGCAGTGGCACCAGGCCTGGTGTGCG................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................TACCTGGCAGACACATGGGCCAGCCCCA...................................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................TGCATGTTCTGGGCAGGGAAGCGAG......................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................TTTTAAAACTCCTCACTGCACTGCTGCC................................................................................................................................................................................................ 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGGTATTGCATGTTCTGGGCAGGG................................................ 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TAACCTCTGGTATTGCATGTTCTGGGCA................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................AACCTCTGGTATTGCATGTTCTGGGC.................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.............................................................................TTCGAGCCCCATACCTGGCAGACACAT.................................................................................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................GCATGTTCTGGGCAGGGAAGCGAGG........................................ 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................CTGGTATTGCATGTTCTGGGCAGGG................................................ 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................CGCAGCAGTGCGGGATCGCTAGAGAG.......... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TCGCAGCAGTGCGGGATCGCTAGAtt........... 26 tt 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................TGGGCAGGGAAGCGAGGGCGTCGCAGCt............................. 28 t 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.TTTTGCCAAGTGTTCGTTCACGCCATT.............................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................GTGTGCGTGTCTAACCTCTGGTATTGC............................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................CAGTGCGGGATCGCTAGAGAGCA........ 23 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGGTATTGCATGTTCTGGGCAGGGAAt............................................. 27 t 1.00 13.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TCTGGGCAGTGGCAGTGGCAGGggaa.......................................................................................................... 26 ggaa 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................TGTTCTGGGCAGGGAAGCGAGGt....................................... 23 t 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
........................................................................................TACCTGGCAGACACATGGGCCAGCCCCAGC.................................................................................................................................... 30 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...TTGCCAAGTGTTCGTTCACGCCATT.............................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..................................AAAACTCCTCACTGCACTGC.................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................................................................................TGGTGTGCGTGTCTAACCTCTGGTAT.................................................................. 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -

Antisense strand
CTTTTGCCAAGTGTTCGTTCACGCCATTGTTTTTAAAACTCCTCACTGCACTGCTGCCAGCCTCCCCACTGAGCCCATTCGAGCCCCATACCTGGCAGACACATGGGCCAGCCCCAGCTCTGGGCAGTGGCAGTGGCAGGTGGCAGTGGCACCAGGCCTGGTGTGCGTGTCTAACCTCTGGTATTGCATGTTCTGGGCAGGGAAGCGAGGGCGTCGCAGCAGTGCGGGATCGCTAGAGAGCAATGTGGAA
.................................................................((.(((.((((((((..(((........))).))...))))))))).(((.((((.(((((...((((((.((((.((....(((((((.((...)).)).)))))...)))))).)))))).))))).)))).)))......))........................................
................................................................65...............................................................................................................................................210......................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
mjTestesWT2()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
............GTTCACGCCATTGTaaag............................................................................................................................................................................................................................ 18 aaag 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -