(1)
OTHER.ip
(2)
OTHER.mut
(5)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(25)
TESTES

Sense strand
GGAAGCGAGGGCGTCGCAGCAGTGCGGGATCGCTAGAGAGCAATGTGGAAGTAAGTAGGAAGCACCCGGTCCAGCTGGCCATCCTGTGTCACCCACCCTTGGTTTCTATGTTGTCTTTTTTTGCTCTTCCCTCCCCTTCCTGCAGAGACACAGACTTGGCCCTCCCGCCCTGCCTGCCTCCGCCCTGCATGCAGCTTCTCTGCCTAGAAGCATCCATGCCTCTCACTGCTTGTTCTGACCCAAGGGTTGC
.....................................................(((.(((.........))).)))(((((..(((((((..(((....))).................(((((.................))))))))))))...))))).........................................................................................
..................................................51..................................................................................................................167.................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
........................................................................................................................................TTCCTGCAGAGACACAGACTTGGCCCT....................................................................................... 27 1 212.00 212.00 78.00 83.00 25.00 15.00 10.00 - - - - - - - - - - - - - - 1.00 - - - - -
............................................................................................................................................TGCAGAGACACAGACTTGGCCCTCCCGCC................................................................................. 29 1 73.00 73.00 30.00 31.00 7.00 4.00 1.00 - - - - - - - - - - - - - - - - - - - -
.................................TAGAGAGCAATGTGGAAGTAAGTAGG............................................................................................................................................................................................... 26 1 66.00 66.00 31.00 19.00 3.00 3.00 2.00 3.00 2.00 2.00 - - - - - - - - - - 1.00 - - - - - -
............................................................................................................................................TGCAGAGACACAGACTTGGCCCTCCCGCCC................................................................................ 30 1 25.00 25.00 11.00 7.00 4.00 3.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TTCCTGCAGAGACACAGACTTGGCCC........................................................................................ 26 1 20.00 20.00 8.00 4.00 3.00 2.00 2.00 - - - - 1.00 - - - - - - - - - - - - - - -
.................................TAGAGAGCAATGTGGAAGTAAGTAG................................................................................................................................................................................................ 25 1 16.00 16.00 8.00 4.00 - - 1.00 3.00 - - - - - - - - - - - - - - - - - - -
.................................TAGAGAGCAATGTGGAAGTAAGTAGGA.............................................................................................................................................................................................. 27 1 13.00 13.00 1.00 6.00 2.00 - 1.00 2.00 1.00 - - - - - - - - - - - - - - - - - -
............................................................................................................................................TGCAGAGACACAGACTTGGCCCTCCCGC.................................................................................. 28 1 12.00 12.00 4.00 5.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................TGTGGAAGTAAGTAGGAAGCACCCGGT.................................................................................................................................................................................... 27 1 12.00 12.00 6.00 5.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................TGGAAGTAAGTAGGAAGCACCCGGTC................................................................................................................................................................................... 26 1 11.00 11.00 4.00 3.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - -
...........................................TGTGGAAGTAAGTAGGAAGCACCCGGTC................................................................................................................................................................................... 28 1 8.00 8.00 2.00 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - -
..................................AGAGAGCAATGTGGAAGTAAGTAGG............................................................................................................................................................................................... 25 1 7.00 7.00 2.00 1.00 - - 3.00 - - - - - - - - 1.00 - - - - - - - - - - -
...................................GAGAGCAATGTGGAAGTAAGTAGGA.............................................................................................................................................................................................. 25 1 7.00 7.00 1.00 2.00 1.00 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - -
........................CGGGATCGCTAGAGAGCAATGTGGAAG....................................................................................................................................................................................................... 27 1 5.00 5.00 - 4.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TCACTGCTTGTTCTGACCCAAGGGTT.. 26 1 5.00 5.00 1.00 1.00 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TTCCTGCAGAGACACAGACTTGGCCCTC...................................................................................... 28 1 4.00 4.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................TGTGGAAGTAAGTAGGAAGCACCCGG..................................................................................................................................................................................... 26 1 4.00 4.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - -
......................................AGCAATGTGGAAGTAAGTAGGAAGCACCC....................................................................................................................................................................................... 29 1 3.00 3.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TGCAGAGACACAGACTTGGCCCTCCCGCCCT............................................................................... 31 1 3.00 3.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................CCTGCAGAGACACAGACTTGGCCCTCCC.................................................................................... 28 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TTCTCTGCCTAGAAGCATCCATGCCTCT........................... 28 1 2.00 2.00 - - - - - - - - 1.00 - 1.00 - - - - - - - - - - - - - -
....................................AGAGCAATGTGGAAGTAAGTAGGAAGC........................................................................................................................................................................................... 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................GAGAGCAATGTGGAAGTAAGTAGG............................................................................................................................................................................................... 24 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - -
.........................................................................................................................................TCCTGCAGAGACACAGACTTGGCCCTC...................................................................................... 27 1 2.00 2.00 - - - - - - 1.00 - - - - - - 1.00 - - - - - - - - - - -
........................CGGGATCGCTAGAGAGCAATGTGGAAGT...................................................................................................................................................................................................... 28 1 2.00 2.00 - 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
........................................................................................................................................TTCCTGCAGAGACACAGACTTGGCCCTCCC.................................................................................... 30 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................GAGCAATGTGGAAGTAAGTAGGAAGC........................................................................................................................................................................................... 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................GAGAGCAATGTGGAAGTAAGTAGGAA............................................................................................................................................................................................. 26 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................AGAGCAATGTGGAAGTAAGTAGGAAG............................................................................................................................................................................................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................CTGCAGAGACACAGACTTGGCCCTCCCG................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................TAGAGAGCAATGTGGAAGTAAGTAGa............................................................................................................................................................................................... 26 a 1.00 16.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TCACTGCTTGTTCTGACCCAAGGGT... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................................................AGAGACACAGACTTGGCCCTCCCGCCC................................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................CAGAGACACAGACTTGGCCCTCCCGC.................................................................................. 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................................................................................................................CTGCCTCCGCCCTGCATGCAGCTTt.................................................... 25 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
............................................................................................................................................TGCAGAGACACAGACTTGGCCCTCCC.................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................CGCTAGAGAGCAATGTGGAAGTAAGT.................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................CGCTAGAGAGCAATGTGGAAGTAAtta................................................................................................................................................................................................. 27 tta 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................CTGCAGAGACACAGACTTGGCCCT....................................................................................... 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................CGGGATCGCTAGAGAGCAATGTGGAA........................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
................CAGCAGTGCGGGATCGCTAGAGAGC................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
......................................AGCAATGTGGAAGTAAGTAGGAAGCACC........................................................................................................................................................................................ 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................GAGAGCAATGTGGAAGTAA.................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
......................TGCGGGATCGCTAGAGAGCAATGTGGA......................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.............................TCGCTAGAGAGCAATGTGGAAGTAAGTA................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................AAGTAAGTAGGAAGCACCCGGTCCAG................................................................................................................................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................CTCACTGCTTGTTCTGACCCAAGGGTTG. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................TCCCCTTCCTGCAGAGACACAGACTTGGCCC........................................................................................ 31 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
......................................................................................................................................................................................................TCTGCCTAGAAGCATCCATGCCTCTCACTGa..................... 31 a 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................................................................................................TGCCTCCGCCCTGCATGCAGCTTCT................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.............TCGCAGCAGTGCGGGATCGCTAGAGA................................................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................CAGTGCGGGATCGCTAGAGAGCAAT.............................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
................................................................................................................................................GAGACACAGACTTGGtcc........................................................................................ 18 tcc 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
......................TGCGGGATCGCTAGAGAGCAATGTGG.......................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............................................................................................................................................CAGAGACACAGACTTGGCCCTCCCGCC................................................................................. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TTCCTGCAGAGACACAGACTTGGCCtt....................................................................................... 27 tt 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TCTTCCCTCCCCTTCCTGCAGAGACACA.................................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................CCCTTCCTGCAGAGACACAGACTTGGCCC........................................................................................ 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TGCAGAGACACAGACTTGGCCCTCCCGCg................................................................................. 29 g 1.00 12.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................CAATGTGGAAGTAAGTAGGAAGCACCC....................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................CAATGTGGAAGTAAGTAGGAAGCACCCGGT.................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..............CGCAGCAGTGCGGGATCGCTAGAGAG.................................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TGCTCTTCCCTCCCCTTCCTGCAGAGA...................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TCCTGCAGAGACACAGACTTGGCCC........................................................................................ 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.................................TAGAGAGCAATGTGGAAGTAAGTAGGAAa............................................................................................................................................................................................ 29 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TGCTTGTTCTGACCCAAGGGTTGCgt 26 gt 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................TGGAAGTAAGTAGGAAGCACCCGGTCC.................................................................................................................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................CACCCACCCTTGGTTTCTATGTTGTCT...................................................................................................................................... 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............TCGCAGCAGTGCGGGATCGCTAGAtt................................................................................................................................................................................................................... 26 tt 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TGCAGAGACACAGACTTGGCCCTCCCGCt................................................................................. 29 t 1.00 12.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................GAGAGCAATGTGGAAGTAAGTAGGAAG............................................................................................................................................................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................CTCCGCCCTGCATGCAGCTTCTCTGC............................................... 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................................TGCTCTTCCCTCCCCTTCCTGCAGAGAC..................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................CTGCCTAGAAGCATCCATGCCTCTCACT....................... 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................CAGTGCGGGATCGCTAGAGAGCA................................................................................................................................................................................................................ 23 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................TGCCTAGAAGCATCCATGCCTCTCACTGCT.................... 30 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................................AATGTGGAAGTAAGTAGGAAGCACCCGGT.................................................................................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TGCAGAGACACAGACTTGGCCCTCCCGCCa................................................................................ 30 a 1.00 73.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TATGTTGTCTTTTTTTGCTCTTCCCTCC.................................................................................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
................................CTAGAGAGCAATGTGGAAGTAAGTAG................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...............................GCTAGAGAGCAATGTGGAAGTAAGT.................................................................................................................................................................................................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................AGAGAGCAATGTGGAAGTAAGTAGGA.............................................................................................................................................................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................CTCTGCCTAGAAGCATCCATGCCTCTC.......................... 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..................................AGAGAGCAATGTGGAAGTAAGTAGGAAG............................................................................................................................................................................................ 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................TCTCACTGCTTGTTCTGACCCAAGGGT... 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -

Antisense strand
GGAAGCGAGGGCGTCGCAGCAGTGCGGGATCGCTAGAGAGCAATGTGGAAGTAAGTAGGAAGCACCCGGTCCAGCTGGCCATCCTGTGTCACCCACCCTTGGTTTCTATGTTGTCTTTTTTTGCTCTTCCCTCCCCTTCCTGCAGAGACACAGACTTGGCCCTCCCGCCCTGCCTGCCTCCGCCCTGCATGCAGCTTCTCTGCCTAGAAGCATCCATGCCTCTCACTGCTTGTTCTGACCCAAGGGTTGC
.....................................................(((.(((.........))).)))(((((..(((((((..(((....))).................(((((.................))))))))))))...))))).........................................................................................
..................................................51..................................................................................................................167.................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
.............................................................................................................................................................................................................................CTGCTTGTTCTGACacct........... 18 acct 2.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - 1.00
...................................................................................................................................................................................................CTGCCTAGAAGCATCcgtt.................................... 19 cgtt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
......................................................................................................................................................................CCTGCCTGCCTCCGaa.................................................................... 16 aa 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -