| Gene: Copg | ID: uc009cug.1_intron_10_0_chr6_87845756_f | SPECIES: mm9 |
|
|
|
(5) PIWI.ip |
(3) PIWI.mut |
(18) TESTES |
| GCTCACCCAAGGCTGCACTTCGCTATGCTGCTGTGCGCACCCTCAATAAGGTAAGAGTTGAGTGGAGAGGAGGGGATGCAGGCTGGTCCAGCTGCTGTCTCCTTTCCCTGAATGGACTGGGAGGCGGGTAGACATGGTCCCCAAAGGACCTCTGGCCAGGCCAGAGGTGAAATGACAGAATTGGGTACTGCCCGGTGTCTGTCCTCCCTCTGCAGGTGGCTATGAAGCACCCTTCAGCGGTGACTGCCTGCAATCTAGATCTGGA ........................................................(((.((.((((((((((....(((.((((...)))))))..)))))))))))).)))...(((.....))).......................................................................................................................................... ..................................................51....................................................................................137.............................................................................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTAAGAGTTGAGTGGAGAGGAGGGG.............................................................................................................................................................................................. | 25 | 1 | 17.00 | 17.00 | 2.00 | 5.00 | 5.00 | - | 2.00 | 1.00 | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - |
| ..................................................GTAAGAGTTGAGTGGAGAGGAGGGGA............................................................................................................................................................................................. | 26 | 1 | 12.00 | 12.00 | 5.00 | 2.00 | - | - | 2.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 |
| ............................................................................................................TGAATGGACTGGGAGGCGGGTAGAC.................................................................................................................................... | 25 | 1 | 7.00 | 7.00 | 1.00 | 1.00 | - | 1.00 | - | - | - | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - |
| ............................................................................................................TGAATGGACTGGGAGGCGGGTAGACA................................................................................................................................... | 26 | 1 | 4.00 | 4.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................GTAAGAGTTGAGTGGAGAGGAGGGGt............................................................................................................................................................................................. | 26 | t | 3.00 | 17.00 | 1.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................AGAGTTGAGTGGAGAGGAGGGGATG........................................................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | 1.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................AAGAGTTGAGTGGAGAGGAGGGGATGt.......................................................................................................................................................................................... | 27 | t | 2.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAAGAGTTGAGTGGAGAGGAGGG............................................................................................................................................................................................... | 24 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ............................................................................................................TGAATGGACTGGGAGGCGGGTAGACAT.................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................GTAAGAGTTGAGTGGAGAGGAGGGGAT............................................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................CCTGAATGGACTGGGAGGCGGGTAGACATGGTCC............................................................................................................................. | 34 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................TGGACTGGGAGGCGGGTAGAC.................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................TGAATGGACTGGGAGGCGGGTAGt..................................................................................................................................... | 24 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .CTCACCCAAGGCTGCACTTC.................................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................GACTGGGAGGCGGGTAGACATGGT............................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...................................................TAAGAGTTGAGTGGAGAGGAGGGGA............................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................TGGACTGGGAGGCGtggc....................................................................................................................................... | 18 | tggc | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................CGGTGACTGCCTGCAATC.......... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................AGAGTTGAGTGGAGAGGAGGGGATGt.......................................................................................................................................................................................... | 26 | t | 1.00 | 3.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................TTTCCCTGAATGGACTGGGAGGCGGGT........................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................GAGTTGAGTGGAGAGGAGGGGATGC.......................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................GAATGGACTGGGAGGCGGGTAGACg................................................................................................................................... | 25 | g | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ................................................................................................................................................................CCAGAGGTGAAATGACAGAATTGGGTACTGC.......................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ......................................................................................................TTTCCCTGAATGGACTGGGAGGCGagt........................................................................................................................................ | 27 | agt | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................TTTCCCTGAATGGACTGGGAGGCGGG......................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................AAGAGTTGAGTGGAGAGGAGGGG.............................................................................................................................................................................................. | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................TTCCCTGAATGGACTGGGAGGCGGGTA....................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................AGAGGTGAAATGACAGAATTGGGTACTGCCt........................................................................ | 31 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................................TCCCTGAATGGACTGGGAGGCGGGTA....................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................AAGAGTTGAGTGGAGAGGAGGGGATG........................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GCTCACCCAAGGCTGCACTTCGCTATGCTGCTGTGCGCACCCTCAATAAGGTAAGAGTTGAGTGGAGAGGAGGGGATGCAGGCTGGTCCAGCTGCTGTCTCCTTTCCCTGAATGGACTGGGAGGCGGGTAGACATGGTCCCCAAAGGACCTCTGGCCAGGCCAGAGGTGAAATGACAGAATTGGGTACTGCCCGGTGTCTGTCCTCCCTCTGCAGGTGGCTATGAAGCACCCTTCAGCGGTGACTGCCTGCAATCTAGATCTGGA ........................................................(((.((.((((((((((....(((.((((...)))))))..)))))))))))).)))...(((.....))).......................................................................................................................................... ..................................................51....................................................................................137.............................................................................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................ATGCTGCTGTGCGCAcggc.................................................................................................................................................................................................................................. | 19 | cggc | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |