| Gene: Jmjd1a | ID: uc009cgy.1_intron_11_0_chr6_71550136_r | SPECIES: mm9 |
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(4) OTHER.mut |
(3) PIWI.ip |
(2) PIWI.mut |
(1) TDRD1.ip |
(22) TESTES |
| GATACATGAGCCTGAGAACCTGATGCCCACACAGATTATTCCTGGCAAAGGTATTTCCTATGAGGCAGGGATCACCACCCCCTCACCTCCAGCCACGTGTCTTGGGTAACTTAAGGGGCTTTAGCTTGCTTTTACTTTGTGTAGTCTAATTGCCTGATTACTTTTAGTATTGTCCTAAACGTACTCAAGAAACATGTTAAATAATATCGCCGCGCTTTTAAAGCTCTCAGGGACTGCATAGTAGAAAGAAAGGAAGTGCCCATTTCAGGAAGGAGGGATAAAAAGGAAGGATGGAGCAGACCATCTTGCTGCTGAGAAAAACATCCCTGTGGGAACGTCTTCTGTGTTGAGACTGTACATGGTAGCTGTCTTTAGCATTTGCCTCTGTCCTCTGTTTTAGCCCTCTACGATGTTGGAGACATTGTGCATTCTGTCAGAGCAAAATGGGGC ..................................................................................................................................................................................................................................................................................................................((..((.(((.......((((...))))..(((((.......)))))...(((.((((((((....))))...))))..))).))).))..))................................................... ............................................................................................................................................................................................................................................................................................................301................................................................................................400................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR037901(GSM510437) testes_rep2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTATTTCCTATGAGGCAGGGATCACCACCCCCTCACCTCCAGCCACGTGTCT............................................................................................................................................................................................................................................................................................................................................................ | 52 | 1 | 57.00 | 57.00 | 48.00 | 9.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTCTGTCAGAGCAAAATGGGGC | 26 | 1 | 4.00 | 4.00 | - | - | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................TACGATGTTGGAGACATTGTGCATTCTGT................ | 29 | 1 | 4.00 | 4.00 | - | - | 1.00 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................TACGATGTTGGAGACATTGTGCATTCTGTC............... | 30 | 1 | 3.00 | 3.00 | - | - | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTCTGTCAGAGCAAAATGGGGCatt | 29 | att | 3.00 | 4.00 | - | - | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............TGAGAACCTGATGCCCACACAGATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................TACGATGTTGGAGACATTGTGCATTCTG................. | 28 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGACATTGTGCATTCTGTCAGAGC.......... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................TACGATGTTGGAGACATTGTGCATT.................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTCTGTCAGAGCAAAATGGG.. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGACATTGTGCATTCTGTCA.............. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTCTGTCAGAGCAAAATGGGGCt | 27 | t | 1.00 | 4.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........GCCTGAGAACCTGATGCCCACACAGATT............................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCATTCTGTCAGAGCAAAATGGt.. | 28 | t | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TGAGCCTGAGAACCTGATGCCCACACAGA............................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..........CCTGAGAACCTGATGCCCACACAGATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGGAGACATTGTGCATTCTGTCAGA............ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........AGCCTGAGAACCTGATGCCCACACAGATTA............................................................................................................................................................................................................................................................................................................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................ACGATGTTGGAGACATTGTGCATTCTG................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTTGGAGACATTGTGCATTCTGTC............... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTGTCAGAGCA......... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCATTCTGTCAGAGCAAAATGGGt. | 28 | t | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................TACGATGTTGGAGACATTGTGCATTC................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................GAGACATTGTGCATTCTGTCAGAG........... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGTCAGAGCAAAATGGGG. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTCTGTCAGAGCAAAATGGGG. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........GCCTGAGAACCTGATGCCCACACAGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTCAGAGCAAAATGGGGC | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGACATTGTGCATTCTGTCAGAGt.......... | 27 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............TGAGAACCTGATGCCCACACAGATTA............................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGGAGACATTGTGCATTCTGTCAG............. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGGAGACATTGTGCATTCTGTC............... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGTGCATTCTGTCAG............. | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| GATACATGAGCCTGAGAACCTGATGCCCACACAGATTATTCCTGGCAAAGGTATTTCCTATGAGGCAGGGATCACCACCCCCTCACCTCCAGCCACGTGTCTTGGGTAACTTAAGGGGCTTTAGCTTGCTTTTACTTTGTGTAGTCTAATTGCCTGATTACTTTTAGTATTGTCCTAAACGTACTCAAGAAACATGTTAAATAATATCGCCGCGCTTTTAAAGCTCTCAGGGACTGCATAGTAGAAAGAAAGGAAGTGCCCATTTCAGGAAGGAGGGATAAAAAGGAAGGATGGAGCAGACCATCTTGCTGCTGAGAAAAACATCCCTGTGGGAACGTCTTCTGTGTTGAGACTGTACATGGTAGCTGTCTTTAGCATTTGCCTCTGTCCTCTGTTTTAGCCCTCTACGATGTTGGAGACATTGTGCATTCTGTCAGAGCAAAATGGGGC ..................................................................................................................................................................................................................................................................................................................((..((.(((.......((((...))))..(((((.......)))))...(((.((((((((....))))...))))..))).))).))..))................................................... ............................................................................................................................................................................................................................................................................................................301................................................................................................400................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR037901(GSM510437) testes_rep2. (testes) |
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| ........................................................................................................................................................................................................................................................................GAAGGAGGGATAAAAgtcc....................................................................................................................................................................... | 19 | gtcc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |