(4)
OTHER.mut
(1)
OVARY
(5)
PIWI.ip
(3)
PIWI.mut
(26)
TESTES

Sense strand
GCCAGCCTGGGAGAAAAGCCCCCAGGGAGGCCAAGCTGGCCAGCAGCTTTGGCTGCATAGGGAACAGAAAGGATGAAAGGACTTTGGGGTTTACTGATTCCCAGGAAGCTTTGAATGGAGAAGTGAGTCTACTGGCAAATGGATGTACCCATGGATGGGCTTTCACACAATTCCTTTTTTTCCCCCTTGTGACTGCTCAGGGGAGGAATGGATGATTCGGAAGGTGAAGGTAGAGGATGAGGATCAGGAG
.....................................................(((...(((((((((((...((((.....))))...))).))).))))).(((.(((((.......)))))...)))....))).................................................................................................................
....................................................53......................................................................................141...........................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR037902(GSM510438)
testes_rep3. (testes)
................................................................................................................................................................................................................TGGATGATTCGGAAGGTGAAGGTAGA................ 26 1 32.00 32.00 14.00 5.00 1.00 - 2.00 1.00 - 1.00 1.00 - - 3.00 - - - - - 2.00 - - - 1.00 - - - 1.00 -
...............................................................................................................TGAATGGAGAAGTGAGTCTACTGGCA................................................................................................................. 26 1 9.00 9.00 1.00 3.00 4.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TGAATGGAGAAGTGAGTCTACTGGCAA................................................................................................................ 27 1 7.00 7.00 - - 2.00 2.00 - - 2.00 - - - - - - - - - - - - - 1.00 - - - - - -
................................................................................................................................................................................................................TGGATGATTCGGAAGGTGAAGGTAG................. 25 1 7.00 7.00 - 2.00 - 3.00 - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................TGAATGGAGAAGTGAGTCTACTGGCAAA............................................................................................................... 28 1 7.00 7.00 - - 2.00 3.00 - - - - - - - - - - - - - - - 2.00 - - - - - - -
...........................................................................................................................................................................................TGTGACTGCTCAGGGGAGGAATGGAT..................................... 26 1 5.00 5.00 2.00 - 1.00 - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................................................................................................................................TGACTGCTCAGGGGAGGAATGGATG.................................... 25 1 4.00 4.00 1.00 - - 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................TGATTCCCAGGAAGCTTTGAATGGAG.................................................................................................................................. 26 1 4.00 4.00 3.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..............................................................................................TGATTCCCAGGAAGCTTTGAATGGA................................................................................................................................... 25 1 4.00 4.00 3.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TGGATGATTCGGAAGGTGAAGGTA.................. 24 1 4.00 4.00 2.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................TTTGAATGGAGAAGTGAGTCTACTGGC.................................................................................................................. 27 1 3.00 3.00 1.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TGTGACTGCTCAGGGGAGGAATGG....................................... 24 1 3.00 3.00 2.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................................................................................................GGAAGCTTTGAATGGAGAAGTGAGTC......................................................................................................................... 26 1 3.00 3.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................TAGGGAACAGAAAGGATGAAAGGACT....................................................................................................................................................................... 26 1 3.00 3.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGATTCGGAAGGTGAAGGTAGAGGAT............ 26 1 3.00 3.00 - 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - 1.00 - - -
..........................................................................................................................................................................................TTGTGACTGCTCAGGGGAGGAATGGA...................................... 26 1 3.00 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................AATGGATGATTCGGAAGGTGAAGGTA.................. 26 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TGTGACTGCTCAGGGGAGGAATGGA...................................... 25 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.....................................................................................................................................................................................................................GATTCGGAAGGTGAAGGTAGA................ 21 1 2.00 2.00 - - - - - - - - - - - - - - 2.00 - - - - - - - - - - - -
...............................................................................................................................................................................................................ATGGATGATTCGGAAGGTGAAGGTAGA................ 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TGTGACTGCTCAGGGGAGGAATGGATG.................................... 27 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................AAGGACTTTGGGGTTTACTGATTCCCAGG................................................................................................................................................. 29 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGACTGCTCAGGGGAGGAATGGATGA................................... 26 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................CCTTGTGACTGCTCAGGGGAGGAATGGA...................................... 28 1 2.00 2.00 - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................ACAGAAAGGATGAAAGGA......................................................................................................................................................................... 18 2 2.00 2.00 - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - -
....................................................................................................................................................................................................................TGATTCGGAAGGTGAAGGTAGAGGA............. 25 1 2.00 2.00 - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
..............................................................................................TGATTCCCAGGAAGCTTTGAATGGAa.................................................................................................................................. 26 a 1.00 4.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................AGGACTTTGGGGTTTACTGATTCCC.................................................................................................................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................ATTCGGAAGGTGAAGGTAGAGGATG........... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................AAAGGATGAAAGGACTTTGGGGTT............................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...............................................................................................................................................................................................................ATGGATGATTCGGAAGGTGAAGGTA.................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................CTTGTGACTGCTCAGGGGAGGAATGG....................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................AGGGGAGGAATGGATGATTCG............................... 21 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................TCGGAAGGTGAAGGTAGAGGATGAG......... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................ATGGATGATTCGGAAGGTGAAGGTAG................. 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..................................................................................................................................................................................................................GATGATTCGGAAGGTGAAGGTAGAGG.............. 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.............................................................................................................TTTGAATGGAGAAGTGAGTCTACTGGCA................................................................................................................. 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................TTGTGACTGCTCAGGGGAGGAATG........................................ 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TGTGACTGCTCAGGGGAGGA........................................... 20 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................AATGGATGTACCCATGGATGGGCTT........................................................................................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................TGGCCAGCAGCTTTGtac.................................................................................................................................................................................................... 18 tac 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.................................................TGGCTGCATAGGGAACAGAAAGGA................................................................................................................................................................................. 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................TGGCTGCATAGGGAACAGAAAGGAT................................................................................................................................................................................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
................AGCCCCCAGGGAGGCCAAGCTGGCCA................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................TTGTGACTGCTCAGGGGAGGAATGGAT..................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TGAATGGAGAAGTGAGTCTACTGGCAAAT.............................................................................................................. 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..........................................................................................................................................................................................TTGTGACTGCTCAGGGGAGGAATGG....................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TGGATGATTCGGAAGGTGAAGGTAGAtt.............. 28 tt 1.00 32.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TGGAGAAGTGAGTCTACTGGCAAAT.............................................................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................CAGGGGAGGAATGGAgtt................................... 18 gtt 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................................TGAATGGAGAAGTGAGTCTACTGGC.................................................................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGACTGCTCAGGGGAGGAATGGATa.................................... 25 a 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..................................................................GAAAGGATGAAAGGACTTTGGGGTTTACa........................................................................................................................................................... 29 a 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TGGAGAAGTGAGTCTACTGGCAAATG............................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................TCAGGGGAGGAATGGATGATTCGGAA............................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................ATGGATGATTCGGAAGGTGAAGGTt.................. 25 t 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................TGCATAGGGAACAGAAAGGATGAAAGG.......................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................TGATTCCCAGGAAGCTTa.......................................................................................................................................... 18 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
............................................................................................................................................................................................................GGAATGGATGATTCGGAAGGTGAAGG.................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGATTCGGAAGGTGAAGGTAGAG............... 23 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................GGAATGGATGATTCGGAAGGTGAAGGTAGAGG.............. 32 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................TGAAGGTAGAGGATGAGGATCAGGAG 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGATTCGGAAGGTGAAGGTAG................. 21 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TGGATGATTCGGAAGGTGAAGG.................... 22 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................CGGAAGGTGAAGGTAGAGGATGAGG........ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -

Antisense strand
GCCAGCCTGGGAGAAAAGCCCCCAGGGAGGCCAAGCTGGCCAGCAGCTTTGGCTGCATAGGGAACAGAAAGGATGAAAGGACTTTGGGGTTTACTGATTCCCAGGAAGCTTTGAATGGAGAAGTGAGTCTACTGGCAAATGGATGTACCCATGGATGGGCTTTCACACAATTCCTTTTTTTCCCCCTTGTGACTGCTCAGGGGAGGAATGGATGATTCGGAAGGTGAAGGTAGAGGATGAGGATCAGGAG
.....................................................(((...(((((((((((...((((.....))))...))).))).))))).(((.(((((.......)))))...)))....))).................................................................................................................
....................................................53......................................................................................141...........................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR037902(GSM510438)
testes_rep3. (testes)
...........................................................................................................GCTTTGAATGGAGAAGTGAGTCTACTG.................................................................................................................... 27 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - -
.......................................................................................GGTTTACTGATTCCCAGGAAGCTTTGAA....................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -