(10)
OTHER.mut
(1)
OVARY
(4)
PIWI.ip
(4)
PIWI.mut
(30)
TESTES

Sense strand
CCAAAACAAGAAGTGATGTGGGCCTGGGCCTATCCCCAACCCTTGAAGAGGCCTGGGCCTAATGAAGAAGTGATGTGGGCCTGGGCCTATCCCTGACCTTGAAGAGGCCTGGGCCTAATGAAGAAGTTATGTGGGCCTGGGCTCTTCCCTGACTCTTGAAGAGGCCTGGGCCTAATGACAAAGTGATGTGGGCCTGGGCTTTCCCCTGACTCTTGAAGAGGCCTGGGCCTAATGAAGAAGTGATGTGGGC
.............................................................................((((..(((((((.......(((....((((....))))....)))..(((((.((((((..((((((((..........)))))).))..)))))))))))........)))))))..))))..................................................
.........................................................58............................................................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
...................................................................................................................TAATGAAGAAGTTATGTGGGCCTGGGC............................................................................................................ 27 13 12.92 12.92 0.54 1.00 8.23 0.23 0.08 1.23 0.15 0.31 0.15 0.23 - 0.08 - - - 0.08 - - - 0.08 - 0.15 0.23 - 0.08 - - - 0.08 - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGa.................................................................................................................................................................... 24 a 7.00 0.00 3.00 3.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCCaa................................................................................................................................................................. 27 aa 6.00 0.00 - 5.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCa................................................................................................................................................................... 25 a 6.00 0.00 1.00 1.00 - - 2.00 - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................TAATGACAAAGTGATGTGGGCCTGGGC................................................... 27 6 4.67 4.67 0.83 1.17 1.67 0.33 - 0.33 - - - 0.17 - - - - - 0.17 - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................TGAAGAAGTGATGTGGGggg 20 ggg 4.00 0.00 4.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TAATGAAGAAGTTATGTGGGCCTGG.............................................................................................................. 25 13 3.46 3.46 1.54 - - 0.08 0.23 0.15 0.08 - 0.08 0.23 - - 0.69 - 0.15 0.08 - - - 0.08 - - - - - - - - - 0.08 -
.....................................................................................................................................................................................................................TGAAGAGGCCTGGGCCTAATGAAGAAa.......... 27 a 3.00 0.00 - - - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................TGACAAAGTGATGTGGGCCTGGGC................................................... 24 6 2.50 2.50 1.67 0.17 - - - 0.33 - - - 0.33 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TGAAGAAGTTATGTGGGCCTGGGC............................................................................................................ 24 13 2.31 2.31 0.23 0.23 0.62 - 0.08 0.23 - 0.15 - 0.15 - 0.08 0.54 - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGaa................................................................................................................................................................... 25 aa 2.00 0.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................TAATGAAGAAGTGATGTGGGggtg....................................................................................................................................................................... 24 ggtg 2.00 0.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................TGACAAAGTGATGTGGGCCTGGGCTT................................................. 26 6 2.00 2.00 0.17 - - 0.33 0.50 0.50 0.17 - - - - - - - - - 0.17 - - - - - - - 0.17 - - - - - -
...........................................................TAATGAAGAAGTGATGTGGGCttgg...................................................................................................................................................................... 25 ttgg 2.00 0.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCat.................................................................................................................................................................. 26 at 2.00 0.00 - 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................TAATGAAGAAGTGATGTGGGactg....................................................................................................................................................................... 24 actg 2.00 0.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................TAATGAAGAAGTGATGTGGGCCTGGa..................................................................................................................................................................... 26 a 2.00 0.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCtta................................................................................................................................................................. 27 tta 2.00 0.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................TAATGACAAAGTGATGTGGGCCTG...................................................... 24 6 1.83 1.83 0.33 - - 0.50 0.33 0.33 0.17 - - - - - - - 0.17 - - - - - - - - - - - - - - - -
............................................................................................................................................................................TAATGACAAAGTGATGTGGGCCTGG..................................................... 25 6 1.67 1.67 0.33 - - - 0.67 0.17 - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................GAAGTTATGTGGGCCTGGGCT........................................................................................................... 21 6 1.50 1.50 - - 1.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCCTA................................................................................................................................................................. 27 19 1.42 1.42 0.21 0.05 0.11 0.68 - - 0.21 - - 0.05 - - - - - - 0.05 - - - - - 0.05 - - - - - - - -
....................................................................................................................AATGAAGAAGTTATGTGGGCCTGGGC............................................................................................................ 26 13 1.38 1.38 0.08 - 1.08 - 0.08 - 0.08 - - 0.08 - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCCa.................................................................................................................................................................. 26 a 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCCTg................................................................................................................................................................. 27 g 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......CAAGAAGTGATGTGGGCCTGGaca............................................................................................................................................................................................................................ 24 aca 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................TAATGAAGAAGTGATGTGGGCCTGGccc................................................................................................................................................................... 28 ccc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................TAATGAAGAAGTGATGTGGGCCggg...................................................................................................................................................................... 25 ggg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGt.................................................................................................................................................................... 24 t 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................................................................................TAATGAAGAAGTTATGTGGGCCTcg.............................................................................................................. 25 cg 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......CAAGAAGTGATGTGGGCCTGGGCCTATCa....................................................................................................................................................................................................................... 29 a 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................TAATGAAGAAGTGATGTGGGCCTGGcc.................................................................................................................................................................... 27 cc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGc..................................................................................................................................................................... 23 c 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCaa.................................................................................................................................................................. 26 aa 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCatta................................................................................................................................................................ 28 atta 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TAATGAAGAAGTTATGTGGGCCTGGGCTa.......................................................................................................... 29 a 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGacta................................................................................................................................................................. 27 acta 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.......................................................................................................................GAAGAAGTTATGTGGGggg................................................................................................................ 19 ggg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................TAATGAAGAAGTGATGTGGGCCTGt...................................................................................................................................................................... 25 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGaa.................................................................................................................................................................... 24 aa 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGa..................................................................................................................................................................... 23 a 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................GAAGAGGCCTGGGCCTAATGAAGAAGTTt......................................................................................................................... 29 t 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..................................................................................................................................................................................CAAAGTGATGTGGGCCTGG..................................................... 19 6 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTaggc.................................................................................................................................................................... 24 aggc 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCCata................................................................................................................................................................ 28 ata 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................TTCCCCTGACTCTTGAgcgt.............................. 20 gcgt 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...........................................................TAATGAAGAAGTGATGTGGGCCTGa...................................................................................................................................................................... 25 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCta.................................................................................................................................................................. 26 ta 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................AAGTTATGTGGGCCTGGGC............................................................................................................ 19 15 0.87 0.87 - - 0.73 - - 0.13 - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TGGGCTTTCCCCTGACTCTTGAAGAGGCC........................... 29 4 0.75 0.75 - - - - - - - - - - - - - 0.50 - - - - - - - - - 0.25 - - - - - - -
......................................................................................................................TGAAGAAGTTATGTGGGCCTGGGCT........................................................................................................... 25 6 0.67 0.67 - - - - - - - 0.17 - - 0.17 0.33 - - - - - - - - - - - - - - - - - - -
......................................................................................................................TGAAGAAGTTATGTGGGCCTGGGCTC.......................................................................................................... 26 6 0.67 0.67 - 0.50 - - - - - - - - - - - - - - - - - - - 0.17 - - - - - - - - -
...............................................................................................................................................................................TGACAAAGTGATGTGGGCCTGGG.................................................... 23 6 0.67 0.67 0.50 - - - - 0.17 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................AAGAAGTTATGTGGGCCTGGGCTCTT........................................................................................................ 26 6 0.50 0.50 0.17 - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TGAAGAAGTTATGTGGGCCTGGGCTCT......................................................................................................... 27 6 0.50 0.50 0.17 - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................TGACCTTGAAGAGGCCTGGGCCTAATGAA................................................................................................................................ 29 6 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................TGACCTTGAAGAGGCCTGGGCCTAATG.................................................................................................................................. 27 6 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................TGACAAAGTGATGTGGGCCTGGGCTTT................................................ 27 6 0.50 0.50 - - - 0.17 0.17 - 0.17 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TGAAGAAGTTATGTGGGCCTGGG............................................................................................................. 23 13 0.46 0.46 0.23 - - - 0.08 - - - - - - - - - - - - - - 0.15 - - - - - - - - - - -
...AAACAAGAAGTGATGTGGGCCTGGGC............................................................................................................................................................................................................................. 26 11 0.45 0.45 - - 0.45 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................TCTTGAAGAGGCCTGGGC............................................................................... 18 14 0.43 0.43 - - - - - - - - - 0.43 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................TGACTCTTGAAGAGGCCTGGGCCTAATGAAG............. 31 8 0.38 0.38 0.12 - 0.12 - - - - - - 0.12 - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................TGGGCCTAATGAAGAAGTTATGTGGGC.................................................................................................................. 27 11 0.36 0.36 0.09 - - 0.27 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................TGACAAAGTGATGTGGGCCTGGGCTTa................................................ 27 a 0.33 2.00 - - - - - 0.17 0.17 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................TGACAAAGTGATGTGGGCCTGG..................................................... 22 6 0.33 0.33 0.17 - - - - - - - - 0.17 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................CAAAGTGATGTGGGCCTGGGCT.................................................. 22 6 0.33 0.33 - - - 0.17 - 0.17 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................TGGGCCTAATGACAAAGTGATGTGGGC......................................................... 27 6 0.33 0.33 0.17 - - - - 0.17 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TAATGAAGAAGTTATGTGGGCCTG............................................................................................................... 24 13 0.31 0.31 0.23 - - - - 0.08 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................TGACTCTTGAAGAGGCCTGGGCCTA................... 25 14 0.29 0.29 - - - 0.14 - - 0.14 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................TGACTCTTGAAGAGGCCTGGGCCTAA.................. 26 14 0.29 0.29 - - - 0.29 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................TGACTCTTGAAGAGGCCTGGGCCTAAT................. 27 14 0.29 0.29 - - - 0.29 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................TGACTCTTGAAGAGGCCTGGGCCTAATGA............... 29 14 0.29 0.29 - - - 0.14 - - - - - 0.14 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................AAGTTATGTGGGCCTGGG............................................................................................................. 18 15 0.27 0.27 - - 0.27 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................TAATGAAGAAGTGATGTGGGCCTGGGCCT.................................................................................................................................................................. 29 19 0.26 0.26 0.05 - - 0.11 - - - - - - - - - - - - - - - 0.11 - - - - - - - - - - -
.............................................................................................TGACCTTGAAGAGGCCTGGGCCTAATGAAG............................................................................................................................... 30 4 0.25 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TAATGAAGAAGTTATGTGGGCCTGGG............................................................................................................. 26 13 0.23 0.23 - - - - - 0.08 - - - 0.08 - - - - - - - - - - 0.08 - - - - - - - - - -
.....ACAAGAAGTGATGTGGGCCTGGGC............................................................................................................................................................................................................................. 24 11 0.18 0.18 - 0.18 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....AACAAGAAGTGATGTGGGCCTGGGC............................................................................................................................................................................................................................. 25 11 0.18 0.18 - - - - - - - 0.18 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................TTGAAGAGGCCTGGGCCTAATGACAAAGT.................................................................. 29 6 0.17 0.17 - - - - - - 0.17 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................TGACAAAGTGATGTGGGCC........................................................ 19 6 0.17 0.17 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................GAAGTTATGTGGGCCTGGGCTCTT........................................................................................................ 24 6 0.17 0.17 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................TAATGACAAAGTGATGTGGGCCTGGGCT.................................................. 28 6 0.17 0.17 - - - - - - - - - - - - - - - - - - - - 0.17 - - - - - - - - - -
.................................................................................TGGGCCTATCCCTGACCTTGAAGAGGCC............................................................................................................................................. 28 6 0.17 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - 0.17 - - - -
............................................................................................................................AGTTATGTGGGCCTGGGCTC.......................................................................................................... 20 6 0.17 0.17 - - - - - - - - - 0.17 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................TCTTGAAGAGGCCTGGGCCTAATGAC....................................................................... 26 6 0.17 0.17 - - - - - - - - - - - - - - - - - - - 0.17 - - - - - - - - - - -
.............................................................................................TGACCTTGAAGAGGCCTGGGCCTAA.................................................................................................................................... 25 6 0.17 0.17 - - - 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TGAAGAAGTTATGTGGGCCTGGGCTCa......................................................................................................... 27 a 0.17 0.67 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................GAAGAAGTTATGTGGGCCTGGGCTC.......................................................................................................... 25 6 0.17 0.17 - - - - - - - - - - - - - - - - - - - 0.17 - - - - - - - - - - -
..............................................................................................................................................................................ATGACAAAGTGATGTGGGCCTGGGC................................................... 25 6 0.17 0.17 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................TGACCTTGAAGAGGCCTGGGCCTAATGA................................................................................................................................. 28 6 0.17 0.17 - - - - - - - - - - - - - 0.17 - - - - - - - - - - - - - - - - -
...........................................................................................................................................................TTGAAGAGGCCTGGGCCTAATGAC....................................................................... 24 6 0.17 0.17 - - - 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................TGACCTTGAAGAGGCCTGGGCCTAAT................................................................................................................................... 26 6 0.17 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.17 - - -
............................................................................................................................................................................TAATGACAAAGTGATGTGGGCCTGt..................................................... 25 t 0.17 1.83 - 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................TGACAAAGTGATGTGGGCCTGGGCa.................................................. 25 a 0.17 2.50 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................TAATGACAAAGTGATGTGG........................................................... 19 6 0.17 0.17 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................AGTTATGTGGGCCTGGGCTCTTCCCT.................................................................................................... 26 6 0.17 0.17 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................TAATGACAAAGTGATGTGGGCCTGc..................................................... 25 c 0.17 1.83 - - - - 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................TGACCTTGAAGAGGCCTGGGCCTAATGt................................................................................................................................. 28 t 0.17 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - 0.17 - - - - -
............................................................................................................................................................TGAAGAGGCCTGGGCCTAATGACAAAG................................................................... 27 6 0.17 0.17 - - - 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TAATGAAGAAGTTATGTGGGCCTGGGCTC.......................................................................................................... 29 6 0.17 0.17 - - - 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TGAAGAAGTTATGTGGGCCTGG.............................................................................................................. 22 13 0.15 0.15 0.08 - - - - - - - - 0.08 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................TGACTCTTGAAGAGGCCTGGGCCTAATG................ 28 14 0.14 0.14 - - - 0.14 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................TCTTGAAGAGGCCTGGGCCTAATGA........................................................................ 25 14 0.14 0.14 - - - 0.14 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................CTGACTCTTGAAGAGGCCTGGGCCTAATGA........................................................................ 30 14 0.14 0.14 - - - - - - - - - - - - - - - - - - - - 0.14 - - - - - - - - - -
..............................................................................................................................................................................................................TGACTCTTGAAGAGGCCTGGGCCTAAa................. 27 a 0.14 0.29 - - - 0.14 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................TAATGAAGAAGTGATGTGGGCCTGGGCC................................................................................................................................................................... 28 19 0.11 0.11 0.05 - - - - - - - - - - - - - - - - - - - - - 0.05 - - - - - - - -
.............................................................ATGAAGAAGTGATGTGGGCCTGGGCC................................................................................................................................................................... 26 19 0.11 0.11 - - - - - 0.11 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................TGGGCCTAATGAAGAAGTTATGTGGG................................................................................................................... 26 11 0.09 0.09 - - - - - - - - - 0.09 - - - - - - - - - - - - - - - - - - - - -
.....ACAAGAAGTGATGTGGGCCTGGGCC............................................................................................................................................................................................................................ 25 11 0.09 0.09 - - - 0.09 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................TGATGTGGGCCTGGGCTT................................................. 18 11 0.09 0.09 - - - - - - 0.09 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TAATGAAGAAGTTATGTGGGCCTGGGa............................................................................................................ 27 a 0.08 0.23 - - - - - - - - - - - - - - - - - - - - - 0.08 - - - - - - - - -
......................................................................................................................TGAAGAAGTTATGTGGGCCTGGGCctt......................................................................................................... 27 ctt 0.08 2.31 - 0.08 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................AATGAAGAAGTTATGTGGGCCTGG.............................................................................................................. 24 13 0.08 0.08 0.08 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................ATGAAGAAGTTATGTGGGCCTGGGC............................................................................................................ 25 13 0.08 0.08 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.08
......................................................................................................................TGAAGAAGTTATGTGGGCCTGGGCcc.......................................................................................................... 26 cc 0.08 2.31 - - - - - - - - - - 0.08 - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TAATGAAGAAGTTATGTGGGCCTGc.............................................................................................................. 25 c 0.08 0.31 0.08 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........AGAAGTGATGTGGGCCTGGGCCTATCCCC..................................................................................................................................................................................................................... 29 14 0.07 0.07 - - - - - - - - - - - - - - - - - 0.07 - - - - - - - - - - - - -
...................................................................................................................................................................................AAAGTGATGTGGGCCTGGG.................................................... 19 14 0.07 0.07 - - - - 0.07 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................GAAGTTATGTGGGCCTGGGC............................................................................................................ 20 14 0.07 0.07 0.07 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................AAGTTATGTGGGCCTGG.............................................................................................................. 17 15 0.07 0.07 0.07 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................AGTTATGTGGGCCTGGGC............................................................................................................ 18 15 0.07 0.07 - - - - - - - - 0.07 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................GTTATGTGGGCCTGGGC............................................................................................................ 17 15 0.07 0.07 0.07 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........AGTGATGTGGGCCTGGGCCTATCCCCAAC.................................................................................................................................................................................................................. 29 16 0.06 0.06 - - - 0.06 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................AGTTATGTGGGCCTGG.............................................................................................................. 16 16 0.06 0.06 0.06 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TGAAGAAGTGATGTGGGCCTGGGCCTAT................................................................................................................................................................ 28 18 0.06 0.06 - - - 0.06 - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
CCAAAACAAGAAGTGATGTGGGCCTGGGCCTATCCCCAACCCTTGAAGAGGCCTGGGCCTAATGAAGAAGTGATGTGGGCCTGGGCCTATCCCTGACCTTGAAGAGGCCTGGGCCTAATGAAGAAGTTATGTGGGCCTGGGCTCTTCCCTGACTCTTGAAGAGGCCTGGGCCTAATGACAAAGTGATGTGGGCCTGGGCTTTCCCCTGACTCTTGAAGAGGCCTGGGCCTAATGAAGAAGTGATGTGGGC
.............................................................................((((..(((((((.......(((....((((....))))....)))..(((((.((((((..((((((((..........)))))).))..)))))))))))........)))))))..))))..................................................
.........................................................58............................................................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
..............................................................................................................................................................................................CTGGGCTTTCCCCTGACTCTTGAAccc................................. 27 ccc 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................GTGGGCCTGGGCTTTCCCCTGACTCTt..................................... 27 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................ACTCTTGAAGAGGCCTGGGCCTAATGAAGAA........... 31 7 0.14 0.14 - - - - - - - - - - - - - - - - - - - - 0.14 - - - - - - - - - -
.............................................................................................................................................................................................................CTGACTCTTGAAGAGGCCTGGGCCTA................... 26 14 0.14 0.14 - - - 0.14 - - - - - - - - - - - - - - - - - - - - - - - - - - -