chr6:47109504 47109753 -
(7)
OTHER.mut 		(1)
OVARY 		(6)
PIWI.ip 		(4)
PIWI.mut 		(30)
TESTES

Sense strand
GGGCCTGGGCCTATCCCTGTCCTTGAAGAGGCCTGGGCCTAATGAAATGATGTGGGCCTGGGCCTATCCCTGACCCTTGAAGATGCCCGGGCTACAATCAGGAAGTGATGTGGGCCTGGGCCTATCCCTGACCTTTGAAGAGGCCTGAGCCAAAATCAAGAAGTGATGTGGGCCTGGGCCTATCCTCAACCCTTGAAGAGGCGTGGGCCTAATGAAGAAGTGATGTGGGCCTGGGCCTATCCCCAACCCT


 Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		mjTestesWT2()
Testes Data. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR014234(GSM319958)
Ovary total. (ovary) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		SRR014229(GSM319953)
10 dpp MILI. (mili testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes) 		SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		mjTestesWT4()
Testes Data. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGa.............. 24 a 7.00 0.00 3.00 - 3.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCCaa........... 27 aa 6.00 0.00 - 1.00 5.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCa............. 25 a 6.00 0.00 1.00 - 1.00 - - 2.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................TAATGAAATGATGTGGGCCTGGGC........................................................................................................................................................................................... 24 4 4.25 4.25 2.00 - 1.25 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................TGAAATGATGTGGGCCTGGGCCTATCC..................................................................................................................................................................................... 27 4 3.00 3.00 - 1.75 0.25 0.25 - - - - - - - - - - - - 0.25 - - - - 0.50 - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGaa............. 25 aa 2.00 0.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................TGACCTTTGAAGAGGCCTGAGCCAAAAT.............................................................................................. 28 4 2.00 2.00 - 0.25 - - - - - - - - 0.75 - 0.75 - - - - - - - - - - 0.25 - - - - - - -
........................................................................................................................................................................................CTCAACCCTTGAAGAGGCGTGt............................................ 22 t 2.00 0.00 - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TAATGAAGAAGTGATGTGGGCCTGGa............... 26 a 2.00 0.00 - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGggg.................. 20 ggg 2.00 0.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCat............ 26 at 2.00 0.00 - - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCtta........... 27 tta 2.00 0.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................TATCCCTGACCTTTGAAGAGGCCTGAGC.................................................................................................... 28 4 1.75 1.75 - 0.25 - - 0.25 - - - - - - - - - - - - 1.25 - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCCTA........... 27 19 1.42 1.42 0.21 0.68 0.05 0.21 - - - - - - - 0.05 - - - - - - 0.05 - - - - - - - - - 0.11 0.05 -
................................................................................................................................TGACCTTTGAAGAGGCCTGAGCCAAAA............................................................................................... 27 4 1.25 1.25 0.75 - - - - - - - - - 0.25 - 0.25 - - - - - - - - - - - - - - - - - -
................................................................................................................................TGACCTTTGAAGAGGCCTGAGCCAAAATC............................................................................................. 29 4 1.25 1.25 - - - - - - - - - - 0.50 - 0.25 - - - - - - - - - - - 0.25 - 0.25 - - - -
......................................................................................................................................................................................TCCTCAACCCTTGAAGAGGCGTGGGCCTA....................................... 29 4 1.25 1.25 - 0.50 - 0.25 - - - - - - - - - - - - - - - 0.50 - - - - - - - - - - -
...........................................................................................................................................................TCAAGAAGTGATGTGGGCCTGGGC....................................................................... 24 4 1.25 1.25 0.25 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TAATGAAGAAGTGATGTGGGactg................. 24 actg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCatta.......... 28 atta 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCaa............ 26 aa 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGacta........... 27 acta 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCCa............ 26 a 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TAATGAAGAAGTGATGTGGGggtg................. 24 ggtg 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................TCCTTGAAGAGGCCTGGGCCTAATGt............................................................................................................................................................................................................. 26 t 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCCTg........... 27 g 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................TGACCTTTGAAGAGGCCTGAGCCAAcatc............................................................................................. 29 catc 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................CAAGAAGTGATGTGGGCCTGGaca...................................................................... 24 aca 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TAATGAAGAAGTGATGTGGGCCTGt................ 25 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................TGACCCTTGAAGATGCCCGGGCTACAATCAGt.................................................................................................................................................... 32 t 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TAATGAAGAAGTGATGTGGGCCTGGccc............. 28 ccc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................TGACCTTTGAAGAGGCCTGAGCCAgaat.............................................................................................. 28 gaat 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................GCCTGGGCCTATCCTaga............................................................. 18 aga 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGaa.............. 24 aa 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TAATGAAGAAGTGATGTGGGCttgg................ 25 ttgg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGa............... 23 a 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................TAATGAAATGATGTGGGCCTGGGCCaa........................................................................................................................................................................................ 27 aa 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................TTGAAGAGGCGTGGGCCTAATGAAt................................. 25 t 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TAATGAAGAAGTGATGTGGGCCggg................ 25 ggg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGt.............. 24 t 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................TCAGGAAGTGATGTGGGCCTGGGC................................................................................................................................. 24 4 1.00 1.00 0.25 - - - 0.25 - - - - - - 0.25 - - - 0.25 - - - - - - - - - - - - - - -
............................................................................................................................................................CAAGAAGTGATGTGGGCCTGGGCCTATCa................................................................. 29 a 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................TCAGGAAGTGATGTGGGCCTGGGCCTt.............................................................................................................................. 27 t 1.00 1.00 - 0.75 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTaggc.............. 24 aggc 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TAATGAAGAAGTGATGTGGGCCTGGcc.............. 27 cc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGc............... 23 c 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCCata.......... 28 ata 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................TCAAGAAGTGATGTGGGCCTGGGCCTt.................................................................... 27 t 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TAATGAAGAAGTGATGTGGGCCTGa................ 25 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................TGAAATGATGTGGGCCTGGGCCTATa...................................................................................................................................................................................... 26 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................TGAAATGATGTGGGCCTGGGCCTAac...................................................................................................................................................................................... 26 ac 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCta............ 26 ta 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................TCAGGAAGTGATGTGGGCCTGGGCCT............................................................................................................................... 26 4 1.00 1.00 0.25 0.50 - - - - - - - - - 0.25 - - - - - - - - - - - - - - - - - - -
............................................................................TTGAAGATGCCCGGGCTACAATaagg.................................................................................................................................................... 26 aagg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................TGAAATGATGTGGGCCTGGGCCTATCCCT................................................................................................................................................................................... 29 4 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................TTGAAGAGGCCTGGGCCTAATGAAA........................................................................................................................................................................................................... 25 4 0.75 0.75 - 0.75 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................AGCCAAAATCAAGAAGTGATGTGGGCC............................................................................ 27 4 0.75 0.75 - - - 0.75 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TCCCTGACCTTTGAAGAGGCCTGAGCC................................................................................................... 27 4 0.75 0.75 - - - - - - - - - - 0.50 - 0.25 - - - - - - - - - - - - - - - - - -
..........................................TGAAATGATGTGGGCCTGGGCCTATC...................................................................................................................................................................................... 26 4 0.75 0.75 0.75 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................TCAGGAAGTGATGTGGGCCTGGGCC................................................................................................................................ 25 4 0.75 0.75 - 0.50 - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................TGAAGATGCCCGGGCTACAATCAGG.................................................................................................................................................... 25 4 0.75 0.75 0.25 - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - 0.25 - - -
.......................................TAATGAAATGATGTGGGCCTGGGCCT......................................................................................................................................................................................... 26 4 0.75 0.75 - 0.25 - - - - - 0.25 - - - - - - - - 0.25 - - - - - - - - - - - - - -
.......................................TAATGAAATGATGTGGGCCTGGGCCTA........................................................................................................................................................................................ 27 4 0.75 0.75 - 0.25 - - - - - - - - - 0.25 - - - - 0.25 - - - - - - - - - - - - - -
.................................................................................................................................................TGAGCCAAAATCAAGAAGTGATGTGGGC............................................................................. 28 4 0.75 0.75 0.25 - - 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................TCAGGAAGTGATGTGGGCCTGGGCCaa.............................................................................................................................. 27 aa 0.50 0.75 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................TGTCCTTGAAGAGGCCTGGGCCTAATG.............................................................................................................................................................................................................. 27 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................TCAGGAAGTGATGTGGGCCTGGGCCTA.............................................................................................................................. 27 4 0.50 0.50 - 0.25 - - - - - - - - - 0.25 - - - - - - - - - - - - - - - - - - -
............................................................................................TACAATCAGGAAGTGATGTGGGCCTGGGC................................................................................................................................. 29 4 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................TAATGAAATGATGTGGGCCTGGG............................................................................................................................................................................................ 23 4 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............CCCTGTCCTTGAAGAGGCCTGG...................................................................................................................................................................................................................... 22 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................TCAACCCTTGAAGAGGCGTGGGCCTAATG.................................... 29 4 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................TCCTCAACCCTTGAAGAGGCGTGGGC.......................................... 26 4 0.50 0.50 - - - - - - - 0.25 - - - - - - - - 0.25 - - - - - - - - - - - - - -
............................................................................................TACAATCAGGAAGTGATGTGGGCCT..................................................................................................................................... 25 4 0.50 0.50 - 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TTGAAGAGGCCTGAGCCAAAATCAAGA......................................................................................... 27 4 0.50 0.50 - 0.25 - - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................TCAGGAAGTGATGTGGGCCTGG................................................................................................................................... 22 4 0.50 0.50 - - 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TAATGAAGAAGTGATGTGGGCCTGGGCCT............ 29 19 0.26 0.26 0.05 0.11 - - - - - - - - - - - - - - 0.11 - - - - - - - - - - - - - -
.................................................................................................TCAGGAAGTGATGTGGGCCTGGGCt................................................................................................................................ 25 t 0.25 1.00 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................TAATGAAATGATGTGGGCCTGGGCCTATCC..................................................................................................................................................................................... 30 4 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TATCCTCAACCCTTGAAGAGGCGTGG............................................ 26 4 0.25 0.25 - - - - - - - - - - - - - - - 0.25 - - - - - - - - - - - - - - -
.................................................................................................TCAGGAAGTGATGTGGGCCTG.................................................................................................................................... 21 4 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................TCAAGAAGTGATGTGGGCCTGGGCC...................................................................... 25 4 0.25 0.25 - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................TGAGCCAAAATCAAGAAGTGATGTGG............................................................................... 26 4 0.25 0.25 - - - - - - - - - - - 0.25 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................TCCTCAACCCTTGAAGAGGCGTGGGCCT........................................ 28 4 0.25 0.25 - - - - - - - - - - - - - - - - 0.25 - - - - - - - - - - - - - -
.............................................................................TGAAGATGCCCGGGCTACAATCAGGA................................................................................................................................................... 26 4 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................TGAGCCAAAATCAAGAAGTGATGTGGG.............................................................................. 27 4 0.25 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................TCCTCAACCCTTGAAGAGGCGTGGG........................................... 25 4 0.25 0.25 - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................TCAAGAAGTGATGTGGGCCTGGGCCTAT................................................................... 28 4 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - 0.25 - - - - - - - - -
.........................................................................................................................................................................................TCAACCCTTGAAGAGGCGTGGGCCTAATGA................................... 30 4 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................TCCCTGACCCTTGAAGATGCCCGGGC.............................................................................................................................................................. 26 4 0.25 0.25 - - - - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TCCCTGACCTTTGAAGAGGCCTGAGCCAA................................................................................................. 29 4 0.25 0.25 - - - - - - - - - - - - - - - - - - - 0.25 - - - - - - - - - - -
.......................................TAATGAAATGATGTGGGCCTGGGCCTATC...................................................................................................................................................................................... 29 4 0.25 0.25 - - - - - - - - - - - - - - - - - - - 0.25 - - - - - - - - - - -
..........................................................................................................................................AGAGGCCTGAGCCAAAATCAAGAAGTG..................................................................................... 27 4 0.25 0.25 - - - - - - - - - - - 0.25 - - - - - - - - - - - - - - - - - - -
..........................................................................................................................TATCCCTGACCTTTGAAGAGGCCTGAGCC................................................................................................... 29 4 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................TTGAAGATGCCCGGGCTACAATCAGG.................................................................................................................................................... 26 4 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................ATGAAATGATGTGGGCCTGGGCCTA........................................................................................................................................................................................ 25 4 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................TGACCCTTGAAGATGCCCGGGCTA............................................................................................................................................................ 24 4 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................TGACCCTTGAAGATGCCCGGGCTACAATC....................................................................................................................................................... 29 4 0.25 0.25 - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................TACAATCAGGAAGTGATGTGGGCC...................................................................................................................................... 24 4 0.25 0.25 - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................TTGAAGATGCCCGGGCTACAATCAG..................................................................................................................................................... 25 4 0.25 0.25 - - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - -
....................CCTTGAAGAGGCCTGGGCCTAATGAAA........................................................................................................................................................................................................... 27 4 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - 0.25 - - - - -
...........................................................................................................................................................TCAAGAAGTGATGTGGGCCTGGG........................................................................ 23 4 0.25 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................GGCCTATCCCTGACCCTTGAAGATGCC................................................................................................................................................................... 27 4 0.25 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TATCCTCAACCCTTGAAGAGGCGTGGG........................................... 27 4 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................TGAAGATGCCCGGGCTACAATCAG..................................................................................................................................................... 24 4 0.25 0.25 - - - - - - - - - - - - - - - 0.25 - - - - - - - - - - - - - - -
.................................................................................................TCAGGAAGTGATGTGGGCCTGGG.................................................................................................................................. 23 4 0.25 0.25 - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................TCAGGAAGTGATGTGGGCCTGGGat................................................................................................................................ 25 at 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................TCAAGAAGTGATGTGGGCCTGG......................................................................... 22 4 0.25 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................AACCCTTGAAGAGGCGTGGGCCTAATGA................................... 28 4 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TATCCTCAACCCTTGAAGAGGCGTGGGC.......................................... 28 4 0.25 0.25 - - - - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - -
................................................................TATCCCTGACCCTTGAAGATGCCCGGG............................................................................................................................................................... 27 4 0.25 0.25 - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................GCCAAAATCAAGAAGTGATGTGGGCC............................................................................ 26 4 0.25 0.25 - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................ATGATGTGGGCCTGGGCCTATCC..................................................................................................................................................................................... 23 6 0.17 0.17 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................TGGGCCTATCCTCAACCCTTGAAGAGGC................................................ 28 6 0.17 0.17 - 0.17 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TAATGAAGAAGTGATGTGGGCCTGGGCC............. 28 19 0.11 0.11 0.05 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.05 -
...................................................................................................................................................................................................................ATGAAGAAGTGATGTGGGCCTGGGCC............. 26 19 0.11 0.11 - - - - 0.11 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................AGAAGTGATGTGGGCCTGGGCCTATCCCC...... 29 14 0.07 0.07 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.07
..........................................................................................................................................................................................................................AGTGATGTGGGCCTGGGCCTATCCCCAAC... 29 16 0.06 0.06 - 0.06 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAAGAAGTGATGTGGGCCTGGGCCTAT.......... 28 18 0.06 0.06 - 0.06 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
GGGCCTGGGCCTATCCCTGTCCTTGAAGAGGCCTGGGCCTAATGAAATGATGTGGGCCTGGGCCTATCCCTGACCCTTGAAGATGCCCGGGCTACAATCAGGAAGTGATGTGGGCCTGGGCCTATCCCTGACCTTTGAAGAGGCCTGAGCCAAAATCAAGAAGTGATGTGGGCCTGGGCCTATCCTCAACCCTTGAAGAGGCGTGGGCCTAATGAAGAAGTGATGTGGGCCTGGGCCTATCCCCAACCCT


 Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		mjTestesWT2()
Testes Data. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR014234(GSM319958)
Ovary total. (ovary) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		SRR014229(GSM319953)
10 dpp MILI. (mili testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes) 		SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		mjTestesWT4()
Testes Data. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
.........................................................................CCTTGAAGATGCCCGGGCTACAATCAGGAa................................................................................................................................................... 30 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..................................................................................CCGGGCTACAATctga........................................................................................................................................................ 16 ctga 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................CTTGAAGATGCCCGGGCTACAATCA...................................................................................................................................................... 25 4 0.25 0.25 - - - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................TGAAGATGCCCGGGCTACAATCAGGAA.................................................................................................................................................. 27 4 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - 0.25 - - - - - - - -