| Gene: Ccdc136 | ID: uc009bdl.1_intron_7_0_chr6_29369384_f.3p | SPECIES: mm9 |
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(2) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(2) PIWI.mut |
(17) TESTES |
| TTGCTAGCTTAACAAACTAAGTGTGACTGTCCTCCACATTACTCTTGAAAAGATTAGTTTGTAGTTCCAAAATACAGTCTTGCACAATGGGACTCTGATGTGATATAAGTAGAGCTTTCTGGAGGTAATATAGCCCTGTCTGGAGGGTAAGATTCATTTAGGTAACAGCAGCCCCACCCTACCCTGCCTCCACCCTGCAGAATCTGGAGGTGATGCTATACTACAAGGCCAGCCAGAGGAGATTAGATGA ....................................................(((((.....(((((((..................))))))))))))....................................................................................................................................................... ..................................................51................................................................117................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................TGGGACTCTGATGTGATATAAGTAGA......................................................................................................................................... | 26 | 1 | 10.00 | 10.00 | 1.00 | 1.00 | 4.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TGGGACTCTGATGTGATATAAGTAGAG........................................................................................................................................ | 27 | 1 | 8.00 | 8.00 | 1.00 | - | 2.00 | - | 3.00 | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - |
| ..................................................................................................TGTGATATAAGTAGAGCTTTCTGGAGG............................................................................................................................. | 27 | 1 | 5.00 | 5.00 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TGTGATATAAGTAGAGCTTTCTGGAG.............................................................................................................................. | 26 | 1 | 5.00 | 5.00 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................TAAGTAGAGCTTTCTGGAGGTAATATAGCC................................................................................................................... | 30 | 1 | 4.00 | 4.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TGTGATATAAGTAGAGCTTTCTGGAGGT............................................................................................................................ | 28 | 1 | 3.00 | 3.00 | 1.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................TGATATAAGTAGAGCTTTCTGGAGGT............................................................................................................................ | 26 | 1 | 3.00 | 3.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ............................................TTGAAAAGATTAGTTTGTAGTTCCAAAAT................................................................................................................................................................................. | 29 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TGGGACTCTGATGTGATATAAGTAGAGC....................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................TGATATAAGTAGAGCTTTCTGGAGGTA........................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................TATAAGTAGAGCTTTCTGGAGGTAAT......................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................TACTACAAGGCCAGCCAGAGGAGAT....... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...............................................................................................TGATGTGATATAAGTAGAGCTTTCTGGA............................................................................................................................... | 28 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................TATAAGTAGAGCTTTCTGGAGGTAA.......................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .............................................TGAAAAGATTAGTTTGTAGTTCCAAAA.................................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................TGAAAAGATTAGTTTGTAGTTCCAAA................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................TGCCTCCACCCTGCAGA................................................. | 17 | 5 | 1.60 | 1.60 | - | - | - | - | - | - | - | - | - | - | - | 1.60 | - | - | - | - | - | - |
| .......................................................................................TGGGACTCTGATGTGATATAAGTAGAGCT...................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................TGTCTGGAGGGTAAGATTCATTTAGGT....................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................TATACTACAAGGCCAGCCAGAGGAGAT....... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TGTGATATAAGTAGAGCTTTCTGag............................................................................................................................... | 25 | ag | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGATGTGATATAAGTAGAGCTTTCTGG................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................................................TGTGATATAAGTAGAGCTTTCTGGAGGTAt.......................................................................................................................... | 30 | t | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................TACAAGGCCAGCCAGAGGAGATTAGAT.. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................AAAAGATTAGTTTGTggcc........................................................................................................................................................................................ | 19 | ggcc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGATGTGATATAAGTAGAGCTTTCTGGAGG............................................................................................................................. | 30 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................TAAGTAGAGCTTTCTGGAGGTAATATAGC.................................................................................................................... | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................CAGAATCTGGAGGTGATGCTATACTAC.......................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................TTGAAAAGATTAGTTTGTAGTTCCAAA................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .....................TGTGACTGTCCTCCACATTACTCTTGA.......................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................TATAAGTAGAGCTTTCTGGAGGTAATA........................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................TAAGTAGAGCTTTCTGGAGGTAATATAG..................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................TAAGATTCATTTAGGTAACAGCAGCCCCA.......................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................TCTTGAAAAGATTAGTTTGTAGTTCC...................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TGTGATATAAGTAGAGCTTTCTGGAGt............................................................................................................................. | 27 | t | 1.00 | 5.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGATGTGATATAAGTAGAGCTTTCTGGAG.............................................................................................................................. | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................CTGGAGGTGATGCTATACTACAAGGCCAGC................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .............................................................................................TCTGATGTGATATAAGTAGAGCTTTCT.................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................AAGTAGAGCTTTCTGGAGGTAATATAGCC................................................................................................................... | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................TACTACAAGGCCAGCCAGAGGAGATTAGA... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................ATGGGACTCTGATGTGATATAAGTAG.......................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .............................................................................................TCTGATGTGATATAAGTAGAGCTTTC................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................TCCTCCACATTACTCTTGAAAAGATTAGa................................................................................................................................................................................................ | 29 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................TACTACAAGGCCAGCCAGAGGAGATT...... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................TAAGTAGAGCTTTCTGGAGGTAATA........................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................TAAGTAGAGCTTTCTGGAGGTAAT......................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................TAAGTAGAGCTTTCTGGAGGTAATATA...................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGATGTGATATAAGTAGAGCTTTCTGta............................................................................................................................... | 28 | ta | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................TACTCTTGAAAAGATTAGTTTGTAGTT........................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TGTGATATAAGTAGAGCTTTCTGGAGGga........................................................................................................................... | 29 | ga | 1.00 | 5.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TGGGACTCTGATGTGATATAAGcaga......................................................................................................................................... | 26 | caga | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................TAAGATTCATTTAGGTAACAGCAGCCCC........................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................TGAAAAGATTAGTTTGTAGTTCCAAAct................................................................................................................................................................................. | 28 | ct | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| TTGCTAGCTTAACAAACTAAGTGTGACTGTCCTCCACATTACTCTTGAAAAGATTAGTTTGTAGTTCCAAAATACAGTCTTGCACAATGGGACTCTGATGTGATATAAGTAGAGCTTTCTGGAGGTAATATAGCCCTGTCTGGAGGGTAAGATTCATTTAGGTAACAGCAGCCCCACCCTACCCTGCCTCCACCCTGCAGAATCTGGAGGTGATGCTATACTACAAGGCCAGCCAGAGGAGATTAGATGA ....................................................(((((.....(((((((..................))))))))))))....................................................................................................................................................... ..................................................51................................................................117................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................AGTTCCAAAATACtcta............................................................................................................................................................................... | 17 | tcta | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |