| Gene: Ccdc136 | ID: uc009bdl.1_intron_6_0_chr6_29368154_f.3p | SPECIES: mm9 |
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(1) OTHER.mut |
(7) PIWI.ip |
(2) PIWI.mut |
(22) TESTES |
| GATCTTCAGGTATTTCAACTTGGGGTGGGGGAGCTATCTGTGAAGCCTCTTAGGTTTCATTGCCTACTTGAACTTCTTATTGTCCACTTCCTTGTGAGCTTTAGCAGGGAGATCTGTGAGAGAGTGGTTTCCTAAGAAAGTCCTGGGCTGACTGGGTGGGACTGCTGTGCTGTGGATAACTGGAGTCCCACTACCAACAGATCAAAGAACTGCAAACTAAGCTGCGGGAGCTGCAGCTGCAGTACCAGGC .........................................................................................(((.((.((((....(((((...(((...((.(((....))))).)))...))))))))).)).))).............................................................................................. .........................................................................................90......................................................................162...................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | GSM475281(GSM475281) total RNA. (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) |
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| ...............................................................................................................................................................................................TACCAACAGATCAAAGAACTGCAAACTAAGC............................ | 31 | 1 | 7.00 | 7.00 | - | 3.00 | - | - | - | - | - | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................TGAGCTTTAGCAGGGAGATCTGTGA................................................................................................................................... | 25 | 1 | 5.00 | 5.00 | 1.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................AAAGAACTGCAAACTAAGCTGCGGGAGC................... | 28 | 1 | 5.00 | 5.00 | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................TGTGAGCTTTAGCAGGGAGATCTGTG.................................................................................................................................... | 26 | 1 | 4.00 | 4.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ........................................................................................................................................................................................................ATCAAAGAACTGCAAACTAAGC............................ | 22 | 1 | 3.00 | 3.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................ACAGATCAAAGAACTGCAAACTAAGCTGC......................... | 29 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..................................................................................................................................................................TGCTGTGCTGTGGATAACTGGAGTC............................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................TAAGAAAGTCCTGGGCTGACTGGGTG............................................................................................ | 26 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................................................................................TTGTGAGCTTTAGCAGGGAGATCTGT..................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................TGTGAGCTTTAGCAGGGAGATCTGTGA................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................TGTGAGCTTTAGCAGGGAGATCTGTGt................................................................................................................................... | 27 | t | 2.00 | 4.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................TGCTGTGCTGTGGATAACTGGtgtc............................................................... | 25 | tgtc | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................GTGAGCTTTAGCAGGGAGATCTGTGAtt................................................................................................................................. | 28 | tt | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................TACCAACAGATCAAAGAACTGCAAACT................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................ACAGATCAAAGAACTGCAAACTAAGCTG.......................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................TTGTGAGCTTTAGCAGGGAGATCTGTG.................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................TTGTGAGCTTTAGCAGGGAGATCTGTGA................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................TTCATTGCCTACTTGAACTTCTTATTGT....................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................TAAGAAAGTCCTGGGCTGACTGGGTtt........................................................................................... | 27 | tt | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................TGGGCTGACTGGGTGttt......................................................................................... | 18 | ttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................................................................................................AAGAAAGTCCTGGGCTGACTGGGTGG........................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................TAAGAAAGTCCTGGGCTGACTGGG.............................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................TGCTGTGCTGTGGATAACTGGAGTCCCACT.......................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................AACTGCAAACTAAGCTGC......................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...........................................................TTGCCTACTTGAACTTCTTATTGTCCACTTC................................................................................................................................................................ | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................GGGGAGCTATCTGTGAttga........................................................................................................................................................................................................... | 20 | ttga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................................................................AACTTCTTATTGTCCACTTCCTTGTGAGC....................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...................................................................................................................................................................................................................GCAAACTAAGCTGCGGGAG.................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................TACCAACAGATCAAAGAACTGCAAACTAAGCT........................... | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................TTCCTAAGAAAGTCCTGGGCTGACTGG............................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................TCCTAAGAAAGTCCTGGGCTGACTGG............................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................GGCTGACTGGGTGGGACTG...................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................CAACAGATCAAAGAACTGCAAACTAAGC............................ | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................TGCAAACTAAGCTGCGGGAGCTGCAG.............. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................TGGATAACTGGAGTCCCACTACCAACA................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................TGCCTACTTGAACTTCTTATTGTCCACTT................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ....................................................................................................................................TAAGAAAGTCCTGGGCTGACTGGGTGGt.......................................................................................... | 28 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................TTGCCTACTTGAACTTCTTATTGTCCAC................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................TTAGCAGGGAGATCTGTGAGAGAGTGGT.......................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................GAGAGTGGTTTCCTAAGAAAGTCCTGGGC...................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GATCTTCAGGTATTTCAACTTGGGGTGGGGGAGCTATCTGTGAAGCCTCTTAGGTTTCATTGCCTACTTGAACTTCTTATTGTCCACTTCCTTGTGAGCTTTAGCAGGGAGATCTGTGAGAGAGTGGTTTCCTAAGAAAGTCCTGGGCTGACTGGGTGGGACTGCTGTGCTGTGGATAACTGGAGTCCCACTACCAACAGATCAAAGAACTGCAAACTAAGCTGCGGGAGCTGCAGCTGCAGTACCAGGC .........................................................................................(((.((.((((....(((((...(((...((.(((....))))).)))...))))))))).)).))).............................................................................................. .........................................................................................90......................................................................162...................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | GSM475281(GSM475281) total RNA. (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) |
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