chr6:29367529 29367981 +
(4)
OTHER.mut 		(7)
PIWI.ip 		(3)
PIWI.mut 		(29)
TESTES

Sense strand
ATGCCAGCAGCAGTACTGATGAGGACCCAGCTGAGCCTGAAGACTTGGAGGTAACCATTGCCAGGTTATTGGTCAGGCAGGGAAGGTGGGTTCCTCTGAAAGAAACAGCACCAGGGGAAGGGCATATGAATGAGATAGGAGCAGGGGCAGAGCAGGCTCGGAGTATGGAAGACTTCTGCTAGTGACTGTCCTGCTTCCTCTTACTCCTGACAGACGTGTCCTGGTTTGCACAAAGACCCCGAGGTTCAGGACTTTGAACATAGTCAGGATGTTCTTTATGGGAGGAAGTATGGTCCCCCCGCCCCACCCCCAGGCAGCTCCAGGAAAGGGCCAGAGGTGTAGAGTGTAGGACAGAGATCAAGGGCTTCTTGGGGTGCTGTCATCAATCCCCCACTCTCTGCAGCACTTTGAGGAAACAGTGGCCAAGGTGCTGACCAAGTTGCAGGCAGTGAA
...........................................................................................((((((.((((((...((.((.......)))).......(((((..((((((.((((((.((.(((..(((((.......))))).))).))..)))))))))))).))))).(((((((.......((..(((((......)))))..)).((((((....))))))...)))))))..))))))...)))))).......................................................................................................................................................................
...........................................................................................92.....................................................................................................................................................................................................291................................................................................................................................................................
 Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR037901(GSM510437)
testes_rep2. (testes) 		GSM509276(GSM509276)
small RNA cloning by length. (testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		GSM475279(GSM475279)
Miwi-IP. (miwi testes)
...................TGAGGACCCAGCTGAGCCTGAAGACT........................................................................................................................................................................................................................................................................................................................................................................................................................ 26 1 11.00 11.00 1.00 1.00 - 3.00 1.00 3.00 - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - -
...................TGAGGACCCAGCTGAGCCTGAAGACTT....................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 8.00 8.00 1.00 - - - 1.00 3.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - 1.00 -
..................ATGAGGACCCAGCTGAGCCTGA............................................................................................................................................................................................................................................................................................................................................................................................................................. 22 1 7.00 7.00 - - 7.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................TAGTCAGGATGTTCTTTATGGGAGGAA...................................................................................................................................................................... 27 1 6.00 6.00 1.00 1.00 - 1.00 1.00 - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................TAGTCAGGATGTTCTTTATGGGAGGA....................................................................................................................................................................... 26 1 5.00 5.00 - 2.00 - - - - - - - - - - - - - - - 2.00 - - - - - - 1.00 - - - -
................................................................................................TGAAAGAAACAGCACCAGGGGAAGGGC.......................................................................................................................................................................................................................................................................................................................................... 27 1 4.00 4.00 1.00 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................GAGGACCCAGCTGAGCCTGAAGACTTGGAGca................................................................................................................................................................................................................................................................................................................................................................................................................. 32 ca 4.00 0.00 - - 4.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............TACTGATGAGGACCCAGCTGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................. 23 1 3.00 3.00 - - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................TGAATGAGATAGGAGCAGGGGCAGAGC............................................................................................................................................................................................................................................................................................................ 27 1 3.00 3.00 - - - 2.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCACTTTGAGGAAACAGTGGC.............................. 25 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................TGAAAGAAACAGCACCAGGGGAAGGG........................................................................................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAACAGTGGCCAAGGTGCTGAC.................. 27 1 2.00 2.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - 1.00 - - -
...................................................................................................................................................................TATGGAAGACTTCTGCTAGTGACTGTC....................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGACAGACGTGTCCTGGTTTGCACAAA........................................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - - - - - - - - - 1.00 1.00 - - - - - - - - - - - - - -
.....................................................................................................................................................................TGGAAGACTTCTGCTAGTGACTGTCCT..................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.TGCCAGCAGCAGTACTGATGAGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - - 1.00 - - - - - - 1.00 - - - - - - - - - - - -
.................GATGAGGACCCAGCTGAGCCTGAAGACTTG...................................................................................................................................................................................................................................................................................................................................................................................................................... 30 1 2.00 2.00 - - - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - -
................TGATGAGGACCCAGCTGAGCCTGAAGACT........................................................................................................................................................................................................................................................................................................................................................................................................................ 29 1 2.00 2.00 - - - - - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - -
..............................................................................................................................TGAATGAGATAGGAGCAGGGGCAGA.............................................................................................................................................................................................................................................................................................................. 25 1 2.00 2.00 - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TATGAATGAGATAGGAGCAGGGGC................................................................................................................................................................................................................................................................................................................. 24 1 2.00 2.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................TGAGCCTGAAGACTTGGAGGTAACCATT.......................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................ATGGAAGACTTCTGCTAGTGACTGTC....................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCACTTTGAGGAAACAGTGGCC............................. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAACAGTGGCCAAGGTGCTGA................... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAACAGTGGCCAAGG......................... 20 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....CAGCAGCAGTACTGATGAGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
............................................................................................................................TATGAATGAGATAGGAGCAGGGGCA................................................................................................................................................................................................................................................................................................................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................GGTGTAGAGTGTAGGACAGAGATCAA............................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAAACAGTGGCCAAGGTGCTG.................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
........................ACCCAGCTGAGCCTGAAGACTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..............ACTGATGAGGACCCAGCTGAGCCTGA............................................................................................................................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..................ATGAGGACCCAGCTGAGCCTGAAGAC......................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................GAGGACCCAGCTGAGCCTGAAGACTTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..................................................................................................................................................................................................................................................................CATAGTCAGGATGTTCTTTATGGGAGG........................................................................................................................................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................TGAATGAGATAGGAGCAGGGGCAGAG............................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCCAAGGTGCTGACCAAGTT............ 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...............................TGAGCCTGAAGACTTGGAGGTAACCAT........................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................TGAAAGAAACAGCACCAGGGGAAG............................................................................................................................................................................................................................................................................................................................................. 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................ATGAGGACCCAGCTGAGCCTGAAGACT........................................................................................................................................................................................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................AGCAGGCTCGGAGTATGGAAGACTTC..................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TATGAATGAGATAGGAGCAGGGGCAG............................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
................................................................................................TGAAAGAAACAGCACCAGGGGAAGGGCA......................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................AGTGTAGGACAGAGATCAAGGGCTTCTT................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................TGATGAGGACCCAGCTGAGCCTGAAGAC......................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................TGAAAGAAACAGCACCAGGGGAAGGGCAT........................................................................................................................................................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
................................................................................................TGAAAGAAACAGCACCAGGGGAAGt............................................................................................................................................................................................................................................................................................................................................ 25 t 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.TGCCAGCAGCAGTACTGATGAGGACCC......................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................TGAGGACCCAGCTGAGCCTGAAGAC......................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAACAGTGGCCAAGGT........................ 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..............................................................................................TCTGAAAGAAACAGCACCAGGGGAAG............................................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............CTGATGAGGACCCAGCTGAGCCTGAAGAC......................................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............GTACTGATGAGGACCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................TTGGTCAGGCAGGGAAGGTGGGTTCt....................................................................................................................................................................................................................................................................................................................................................................... 26 t 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........GCAGTACTGATGAGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
...........................................................................................................................................................................................................................................................................................................................................................AGGACAGAGATCAAGGGCTTCTTGGG................................................................................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................AGAGTGTAGGACAGAGATCAAGGGC........................................................................................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................GCAGGCTCGGAGTATGGAAGACTTCTG................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
................TGATGAGGACCCAGCTGAGCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................GAGCCTGAAGACTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................TGAGCCTGAAGACTTGGAGGTAACC............................................................................................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TGCTTCCTCTTACTCCTGACAGACGTG........................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -

Antisense strand
ATGCCAGCAGCAGTACTGATGAGGACCCAGCTGAGCCTGAAGACTTGGAGGTAACCATTGCCAGGTTATTGGTCAGGCAGGGAAGGTGGGTTCCTCTGAAAGAAACAGCACCAGGGGAAGGGCATATGAATGAGATAGGAGCAGGGGCAGAGCAGGCTCGGAGTATGGAAGACTTCTGCTAGTGACTGTCCTGCTTCCTCTTACTCCTGACAGACGTGTCCTGGTTTGCACAAAGACCCCGAGGTTCAGGACTTTGAACATAGTCAGGATGTTCTTTATGGGAGGAAGTATGGTCCCCCCGCCCCACCCCCAGGCAGCTCCAGGAAAGGGCCAGAGGTGTAGAGTGTAGGACAGAGATCAAGGGCTTCTTGGGGTGCTGTCATCAATCCCCCACTCTCTGCAGCACTTTGAGGAAACAGTGGCCAAGGTGCTGACCAAGTTGCAGGCAGTGAA
...........................................................................................((((((.((((((...((.((.......)))).......(((((..((((((.((((((.((.(((..(((((.......))))).))).))..)))))))))))).))))).(((((((.......((..(((((......)))))..)).((((((....))))))...)))))))..))))))...)))))).......................................................................................................................................................................
...........................................................................................92.....................................................................................................................................................................................................291................................................................................................................................................................
 Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR037901(GSM510437)
testes_rep2. (testes) 		GSM509276(GSM509276)
small RNA cloning by length. (testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		GSM475279(GSM475279)
Miwi-IP. (miwi testes)
..........................................................................................................................................................GGCTCGGAGTATGGAAGACTTCTGCTA................................................................................................................................................................................................................................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -