| Gene: Snd1 | ID: uc009bct.1_intron_8_0_chr6_28481500_f.5p | SPECIES: mm9 |
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(4) OTHER.mut |
(3) PIWI.ip |
(1) PIWI.mut |
(20) TESTES |
| TGCCTCCCACTGCTAATTTGGACCAAAAGGACAAGCAGTTCGTTGCCAAGGTGAGTCATTCTCAGCATGTTAATATGCAGAGTGGACATTGCCAGACCAGTGATGATACAAGGATCTGAACAATTAGAGATGCTGTAGCTCCTGACCGTTACAGAGAAGACTCCACCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG .........................................................................................................(((((....(((((((..((((.((.((....))))))))..))).))))........(((((..((((......))))..)).)))..)))))................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
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| ...............................................................................................ACCAGTGATGATACAAGGATCTGAAC................................................................................................................................. | 26 | 1 | 58.00 | 58.00 | 22.00 | 12.00 | 6.00 | 5.00 | - | 3.00 | 2.00 | 3.00 | 2.00 | - | 1.00 | - | - | 1.00 | - | - | - | 1.00 | - | - |
| ............CTAATTTGGACCAAAAGGACAAGCAGT................................................................................................................................................................................................................... | 27 | 1 | 6.00 | 6.00 | - | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGCTAATTTGGACCAAAAGGACAAGCAGT................................................................................................................................................................................................................... | 29 | 1 | 4.00 | 4.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .............TAATTTGGACCAAAAGGACAAGCAGTTC................................................................................................................................................................................................................. | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - |
| ..............................................................................................GACCAGTGATGATACAAGGATCTGAAC................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........GCTAATTTGGACCAAAAGG............................................................................................................................................................................................................................ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....TCCCACTGCTAATTTGGACCAAAAGGACA......................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...............................................................................................ACCAGTGATGATACAAGGATCTG.................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................ACCAGTGATGATACAAGGATC...................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................ACCAGTGATGATACAAGGATCTGAA.................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................TTTGGACCAAAAGGACAAGCAGTTCGT............................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .......CACTGCTAATTTGGACCAAAA.............................................................................................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................ACCAGTGATGATACAAGGATCT..................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..................TGGACCAAAAGGACAAGCAGTTCGTTGCCA.......................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| TGCCTCCCACTGCTAATTTGGACCAAAAGGACAAGCAGTTCGTTGCCAAGGTGAGTCATTCTCAGCATGTTAATATGCAGAGTGGACATTGCCAGACCAGTGATGATACAAGGATCTGAACAATTAGAGATGCTGTAGCTCCTGACCGTTACAGAGAAGACTCCACCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG .........................................................................................................(((((....(((((((..((((.((.((....))))))))..))).))))........(((((..((((......))))..)).)))..)))))................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
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