| Gene: 1700034M03Rik | ID: uc009ava.1_intron_2_0_chr6_3466745_f.5p | SPECIES: mm9 |
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(6) OTHER.mut |
(1) OVARY |
(1) PIWI.ip |
(13) TESTES |
| AAGTCTATTTTTCTGCGGATCCATTTGATATTGTTAAATATGAGCTGGAGGTAAAAGGGAACTTTGATTAAAACACATCTAAAGCTCATTTCCTCAGTGCATACGAATGAATTTGTGAGATCTAAAGTTTGGAGGGAACTAATATTTTTTTAATAACACTAACAGGTCTGTGATTATCACAATATGAACTTAATGAACTGTCAGCCCATGTTATTAAGTGCACCTTCAGAGTACTGGTTACAGAAGTACT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
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| ............................................................................................................................................................CACTAACAGGTCTGTGATg........................................................................... | 19 | g | 482.00 | 27.00 | 148.00 | 175.00 | 103.00 | 9.00 | 28.00 | 13.00 | 5.00 | 1.00 | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGATgc.......................................................................... | 20 | gc | 130.00 | 27.00 | 52.00 | 9.00 | 8.00 | 45.00 | 6.00 | 10.00 | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGATgcc......................................................................... | 21 | gcc | 84.00 | 27.00 | 47.00 | 9.00 | 6.00 | 14.00 | 3.00 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGA............................................................................. | 17 | 1 | 59.00 | 59.00 | 2.00 | 12.00 | 30.00 | 2.00 | 5.00 | 5.00 | 3.00 | - | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGATgccc........................................................................ | 22 | gccc | 27.00 | 27.00 | 6.00 | 7.00 | 4.00 | 1.00 | 6.00 | - | 2.00 | 1.00 | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGAT............................................................................ | 18 | 1 | 27.00 | 27.00 | 4.00 | 4.00 | 17.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - |
| ..............................................................................................................................................................CTAACAGGTCTGTGATgc.......................................................................... | 18 | gc | 6.00 | 0.00 | 3.00 | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGAT............................................................................ | 15 | 8 | 3.50 | 3.50 | - | 0.12 | 2.38 | 0.12 | 0.38 | 0.25 | - | - | - | - | - | - | - | 0.25 |
| ............................................................................................................................................................CACTAACAGGTCTGTG.............................................................................. | 16 | 3 | 3.00 | 3.00 | 1.67 | - | 0.67 | 0.33 | - | - | 0.33 | - | - | - | - | - | - | - |
| ..............................................................................................................................................................CTAACAGGTCTGTGATg........................................................................... | 17 | g | 3.00 | 0.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................CTAACAGGTCTGTGATgcc......................................................................... | 19 | gcc | 2.00 | 0.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATTccc........................................................................ | 19 | ccc | 2.00 | 0.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGATTc.......................................................................... | 20 | c | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGATc........................................................................... | 19 | c | 1.00 | 27.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGAct........................................................................... | 19 | ct | 1.00 | 59.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ................................................................................................................................................................AACAGGTCTGTGATTAatca...................................................................... | 20 | atca | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGATgctc........................................................................ | 22 | gctc | 1.00 | 27.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGATgg.......................................................................... | 20 | gg | 1.00 | 27.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..................................TAAATATGAGCTGGAGGTAAAAGGGA.............................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .............TGCGGATCCATTTGATATTGTTAAATA.................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........................................................................................................................................................................................................................................CTGGTTACAGAAGTAgtt | 18 | gtt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ................................................................................................................................................................AACAGGTCTGTGATTccct....................................................................... | 19 | ccct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...................TCCATTTGATATTGTTAAATATGAGC............................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATga.......................................................................... | 17 | ga | 0.88 | 3.50 | 0.38 | - | - | 0.38 | - | - | 0.12 | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgcg......................................................................... | 18 | gcg | 0.75 | 3.50 | 0.75 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGcgc........................................................................... | 19 | cgc | 0.67 | 3.00 | - | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................CACTAACAGGTCTGTGttgc.......................................................................... | 20 | ttgc | 0.33 | 3.00 | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgt.......................................................................... | 17 | gt | 0.25 | 3.50 | - | - | 0.12 | - | - | - | 0.12 | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgcgc........................................................................ | 19 | gcgc | 0.25 | 3.50 | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgtcc........................................................................ | 19 | gtcc | 0.25 | 3.50 | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgcgg........................................................................ | 19 | gcgg | 0.12 | 3.50 | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgct......................................................................... | 18 | gct | 0.12 | 3.50 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATggga........................................................................ | 19 | ggga | 0.12 | 3.50 | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgtgc........................................................................ | 19 | gtgc | 0.12 | 3.50 | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgca......................................................................... | 18 | gca | 0.12 | 3.50 | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgcac........................................................................ | 19 | gcac | 0.12 | 3.50 | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgggg........................................................................ | 19 | gggg | 0.12 | 3.50 | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgac......................................................................... | 18 | gac | 0.12 | 3.50 | - | - | - | - | - | - | 0.12 | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TAACAGGTCTGTGATgtc......................................................................... | 18 | gtc | 0.12 | 3.50 | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - |
| AAGTCTATTTTTCTGCGGATCCATTTGATATTGTTAAATATGAGCTGGAGGTAAAAGGGAACTTTGATTAAAACACATCTAAAGCTCATTTCCTCAGTGCATACGAATGAATTTGTGAGATCTAAAGTTTGGAGGGAACTAATATTTTTTTAATAACACTAACAGGTCTGTGATTATCACAATATGAACTTAATGAACTGTCAGCCCATGTTATTAAGTGCACCTTCAGAGTACTGGTTACAGAAGTACT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
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