| Gene: B230342M21Rik | ID: uc009aue.1_intron_1_0_chr5_151395794_r.3p | SPECIES: mm9 |
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(4) OTHER.mut |
(5) PIWI.ip |
(2) PIWI.mut |
(20) TESTES |
| AAGCCGCCCGCCCTTCTCAGCGTCTTGGCTCCTGTTTACATCTCTGTGACTGCGCTTAGGTTTGCACACGGTTGCTTTTGCCTTCTGTGAGATACTTGAAGATAGGGGCCATGTCTTACCCTCCGTGAACGTTATCGGGCACACACTAGTCGATAGAAGCAGTCACTTGCCACCTGTGTGCTTGCTTCCCTTCTCATCAGATAAGGCTAGCCCTAGGACCCTGGAACCGCTGAAGAATCAAGGTAGCCCG ...........................................(((((..((((........)))))))))..(((((((.((((.(((...)))..)))).)))))))............................................................................................................................................. .........................................42.....................................................................113....................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................................................................TAGGACCCTGGAACCGCTGAAGAATC........... | 26 | 1 | 8.00 | 8.00 | 4.00 | - | - | - | - | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................TGGAACCGCTGAAGAATCAAGGTAGCCC. | 28 | 1 | 5.00 | 5.00 | - | 1.00 | - | 1.00 | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................TGGAACCGCTGAAGAATCAAGGTAGCC.. | 27 | 1 | 5.00 | 5.00 | - | 1.00 | - | - | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................TGACTGCGCTTAGGTTTGCACACGGT.................................................................................................................................................................................. | 26 | 1 | 4.00 | 4.00 | - | - | 1.00 | - | 1.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................TGGAACCGCTGAAGAATCAAGGTAGC... | 26 | 1 | 3.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 |
| ..................................................................................TTCTGTGAGATACTTGAAGATAGGGGC............................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TACCCTCCGTGAACGTTATCGGGCAC............................................................................................................ | 26 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................................................TGTGAGATACTTGAAGATAGGGGCCAT.......................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TAGGACCCTGGAACCGCTGAAGAATCA.......... | 27 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................CTGTGAGATACTTGAAGATA.................................................................................................................................................. | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TACCCTCCGTGAACGTTATCGGGCACAC.......................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................CCTGGAACCGCTGAAGAATCAAGGTA..... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................TGAACGTTATCGGGCACACACTAGTCGAT................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................AGGACCCTGGAACCGCTGAAGAATCAAGG....... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................................................................................................................................................................................................................TAGGACCCTGGAACCGCTGAAGAA............. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TCGATAGAAGCAGTCACTTGCCACCTG.......................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .....................................................................................TGTGAGATACTTGAAGATAGGGGCCA........................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................TGCTTTTGCCTTCTGTGAGATACTTGA....................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................AACCGCTGAAGAgata.......... | 16 | gata | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................GCTAGCCCTAGGACCCTGGAACCGCTG.................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...........................................................................TTTTGCCTTCTGTGAGATACTTGAA...................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TCGGGCACACACTAGTCGATAGAAGCA......................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TTCTGTGAGATACTTGAAGATAGGGGCC............................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................TCAGATAAGGCTAGCCCTAGGACCC............................. | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................TTACCCTCCGTGAACGTTATCGGGCcc............................................................................................................ | 27 | cc | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TGAGATACTTGAAGATAGGGGCCATG......................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................TTTTGCCTTCTGTGAGATACTTGAAGA.................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TCCGTGAACGTTATCGGGCACACACT....................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TTCTGTGAGATACTTGAAGATAGGGG.............................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..................................................TGCGCTTAGGTTTGCACACGGTTGCTT............................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| AAGCCGCCCGCCCTTCTCAGCGTCTTGGCTCCTGTTTACATCTCTGTGACTGCGCTTAGGTTTGCACACGGTTGCTTTTGCCTTCTGTGAGATACTTGAAGATAGGGGCCATGTCTTACCCTCCGTGAACGTTATCGGGCACACACTAGTCGATAGAAGCAGTCACTTGCCACCTGTGTGCTTGCTTCCCTTCTCATCAGATAAGGCTAGCCCTAGGACCCTGGAACCGCTGAAGAATCAAGGTAGCCCG ...........................................(((((..((((........)))))))))..(((((((.((((.(((...)))..)))).)))))))............................................................................................................................................. .........................................42.....................................................................113....................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................GTTTGCACACGGTacca.................................................................................................................................................................................. | 17 | acca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .GCCGCCCGCCCTTCTCAGCGa.................................................................................................................................................................................................................................... | 21 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................CCATGTCTTACCCTCCGTGAACGTTA.................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |