(3)
OTHER.mut
(4)
PIWI.ip
(1)
PIWI.mut
(1)
TDRD1.ip
(21)
TESTES

Sense strand
GGAGCCTCTGTGGGAGCCAAGCACCTGTGTGTGCAGCCCTGCAGGTTGTGGGAAGGAGGGGAGACAGGGCAGCACAGGAGGGCACCAGCTATGCTTCCTTTTCCTGCCGTTCTGGTCTGCTCGCCTCCATGCTGGCACTCTCTGGGTAGTCGGCTCTTAAATCTGACCTGCGCTGTTATGTTGCTTCTGTCTGGACATAGGCAGCAGTGAAGACGGAGACAAGGACTAGTTGGCTGTAGACACTCTCCCA
..................................................................................................................................(((((((((.....))).)))))).................(((((((((((((....))...))))))).)))).............................................
...............................................................................................................................128...........................................................................206..........................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
...............................................................................................................................................................................................................TGAAGACGGAGACAAGGACTAGTTGG................. 26 1 11.00 11.00 1.00 5.00 - 1.00 2.00 1.00 - 1.00 - - - - - - - - - - - - -
...............................................................................................................................................................................................TGGACATAGGCAGCAGTGAAGACGGAG................................ 27 1 6.00 6.00 1.00 - 2.00 1.00 - 1.00 - 1.00 - - - - - - - - - - - - -
.............................................................................................................................................................................TGTTATGTTGCTTCTGTCTGGACATAGGC................................................ 29 1 5.00 5.00 - - 2.00 1.00 - - - - - - - - 1.00 - - - - - - - 1.00
..............................................................................................................................................................................................................GTGAAGACGGAGACAAGGACTAGTTG.................. 26 1 5.00 5.00 2.00 2.00 - - - - - - - 1.00 - - - - - - - - - - -
...........................................................................................................................................................................................TGTCTGGACATAGGCAGCAGTGAAGAC.................................... 27 1 5.00 5.00 2.00 1.00 - - - - - 1.00 - 1.00 - - - - - - - - - - -
....................................................................................................................................TGGCACTCTCTGGGTAGTCGGCTCTT............................................................................................ 26 1 4.00 4.00 1.00 2.00 - - 1.00 - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................GTGAAGACGGAGACAAGGACTAGTTGG................. 27 1 4.00 4.00 2.00 2.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................TGGCTGTAGACACTCTCCCA 20 1 3.00 3.00 - - - - - - - - - - - 3.00 - - - - - - - - -
..........................................................................................................................................................................................................AGCAGTGAAGACGGAGACAAGGACTA...................... 26 1 3.00 3.00 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - -
..................................................................................................................................................................................TGTTGCTTCTGTCTGGACATAGGCAGC............................................. 27 1 3.00 3.00 - - 1.00 - - - - - 1.00 - - - - - - - 1.00 - - - -
...............................................................................................................................................................................TTATGTTGCTTCTGTCTGGACATAGGC................................................ 27 1 3.00 3.00 - - 1.00 - - - - - 1.00 - - - - - - - - - 1.00 - -
...............................................................................................................................................................................................TGGACATAGGCAGCAGTGAAGACGGAGA............................... 28 1 3.00 3.00 1.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGAAGACGGAGACAAGGACTAGTTGGC................ 27 1 3.00 3.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................AAGACGGAGACAAGGACTAGTTGGCTG.............. 27 1 3.00 3.00 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - -
.......................................TGCAGGTTGTGGGAAGGAGGGGAGA.......................................................................................................................................................................................... 25 1 3.00 3.00 1.00 - - - 2.00 - - - - - - - - - - - - - - - -
.................................................................................................................................................................TCTGACCTGCGCTGTTATGTTGCTTC............................................................... 26 1 2.00 2.00 - - - - - - - - 1.00 - - - - - - 1.00 - - - - -
...........................................................................................................................................................................................TGTCTGGACATAGGCAGCAGTGAAGACG................................... 28 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................GGAGACAAGGACTAGTTGGCTGTAGACA........ 28 1 2.00 2.00 - - 1.00 - - - - - - - - - - - 1.00 - - - - - -
..................................................................................................................................................................................TGTTGCTTCTGTCTGGACATAGGCAG.............................................. 26 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................................................TGGCACTCTCTGGGTAGTCGGCTCTTA........................................................................................... 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TGGACATAGGCAGCAGTGAAGACGGA................................. 26 1 2.00 2.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TAGGCAGCAGTGAAGACGGAGACAAGG.......................... 27 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - -
.......................................TGCAGGTTGTGGGAAGGAGGGGAG........................................................................................................................................................................................... 24 1 2.00 2.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TAGGCAGCAGTGAAGACGGAGACAAGGAC........................ 29 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................TGGGTAGTCGGCTCTTAAATCTGACC.................................................................................. 26 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TAGGCAGCAGTGAAGACGGAGACAAG........................... 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................TGCGCTGTTATGTTGCTTCTGTCTGGAC...................................................... 28 1 2.00 2.00 - - - - 1.00 - 1.00 - - - - - - - - - - - - - -
......................................................................................................................................................................................................................GGAGACAAGGACTAGTTGGCTGTAGAC......... 27 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................GCAGTGAAGACGGAGACAAGGACTAG..................... 26 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - -
....................................................................................................TTCCTGCCGTTCTGGTCTGCTCGCCTC........................................................................................................................... 27 1 2.00 2.00 - - - - - 1.00 - - - - 1.00 - - - - - - - - - -
...........................................................................................................................................................................................TGTCTGGACATAGGCAGCAGTGAAGA..................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................AAGACGGAGACAAGGACTAGTTGGC................ 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - -
............................................................................................................................................................................................................CAGTGAAGACGGAGACAAGGACTAG..................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGAAGACGGAGACAAGGACTAGTTaaa................ 27 aaa 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TTGCTTCTGTCTGGACATAGGCAGCA............................................ 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................GGAGACAAGGACTAGTTGGCTGTAGACAC....... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................TATGTTGCTTCTGTCTGGACATAGGCA............................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGTTGCTTCTGTCTGGACATAGGCAa.............................................. 26 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................TGCCGTTCTGGTCTGCTCGCCTCC.......................................................................................................................... 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................CGGAGACAAGGACTAGTTGGCTGTAG........... 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - -
..................................................................................................................................................................................................................................TAGTTGGCTGTAGACACTCTCCCAga 26 ga 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - -
.....................................................................................................................................GGCACTCTCTGGGTAGTCGGCTCTT............................................................................................ 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGAAGACGGAGACAAGGACTAGTTGGt................ 27 t 1.00 11.00 - - - - - 1.00 - - - - - - - - - - - - - - -
...........................................................................................TGCTTCCTTTTCCTGCCGTTCTGGTC..................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - -
....................................................................................................................................TGGCACTCTCTGGGTAGTCGGC................................................................................................ 22 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - -
..................................................................................................................................................................................................................AGACGGAGACAAGGACTAGTTGGCTGT............. 27 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - -
.....................................................................................................................................................................................................................CGGAGACAAGGACTAGTTGGCTGTAGAC......... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TGGACATAGGCAGCAGTGAAGACGGAGAC.............................. 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................GCAGTGAAGACGGAGACAAGGACTAGT.................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................GAAGACGGAGACAAGGACTAGTTGGC................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
........TGTGGGAGCCAAGCACCTGTGTGTa......................................................................................................................................................................................................................... 25 a 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - -
.........................................................................................................................................CTCTCTGGGTAGTCGGCTCTTAAATCTG..................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................................................TGGCACTCTCTGGGTAGTCGGCTC.............................................................................................. 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGAAGACGGAGACAAGGACTAGTTG.................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TGGACATAGGCAGCAGTGA........................................ 19 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................................................TCTCTGGGTAGTCGGCTCTTAAATCTGt.................................................................................... 28 t 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGAAGACGGAGACAAGGACTAGTTGa................. 26 a 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................GAAGACGGAGACAAGGACTAGTTGGCT............... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................ATAGGCAGCAGTGAAGACGGAGACAAGtt......................... 29 tt 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - -
.............................................................................................................................................................................TGTTATGTTGCTTCTGTCTGGACATAGG................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................AGACGGAGACAAGGACTAGTTGGCT............... 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - -
....................................................................................................................................................................................................................ACGGAGACAAGGACTAGTTGGCT............... 23 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
................................................................................................................................................................................TATGTTGCTTCTGTCTGGACATAGGCAGC............................................. 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................CAAGGACTAGTTGGCTGT............. 18 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
.........................................................................................................................................................................GCGCTGTTATGTTGCTTCTGTCTGGAC...................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................................................................TCTGACCTGCGCTGTTATGTTGCTTCT.............................................................. 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - -
............................................................................................................................................................................................GTCTGGACATAGGCAGCAGTGAAGACGt.................................. 28 t 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................................................................................................................TGTTATGTTGCTTCTGTCTGGACATAG.................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................AGTGAAGACGGAGACAAGGACTAGTTG.................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................TGCGCTGTTATGTTGCTTCTGTCTGGACA..................................................... 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................ACAAGGACTAGTTGGCTGTAGACACT...... 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
..................................................................................................................................................................................................................AGACGGAGACAAGGACTAGTTGGCTa.............. 26 a 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................TGCGCTGTTATGTTGCTTCTGTCTGGA....................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................CGGAGACAAGGACTAGTTGGCTGTAGt.......... 27 t 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................................................TCTCTGGGTAGTCGGCTCTTAAATCTG..................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................AGACGGAGACAAGGACTAGTTGGCTG.............. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................TGCAGGTTGTGGGAAGGAGGGGAGACA........................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
..................................................................................................................................................................................TGTTGCTTCTGTCTGGACATAGGCAGg............................................. 27 g 1.00 2.00 - - - - - - - - 1.00 - - - - - - - - - - - -
........................................................................................................................................................................................TTCTGTCTGGACATAGGCAGCAGTGAA....................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................GAAGACGGAGACAAGGACTAGTTGG................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 -
..............................................................................................................................................................................................CTGGACATAGGCAGCAGTGAAGACGGAG................................ 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
........................................GCAGGTTGTGGGAAGGAGGGGAGAC......................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - -
.........................................................................................................................................................................................TCTGTCTGGACATAGGCAGCAGTGAAG...................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TGGACATAGGCAGCAGTGAAGACGGAGt............................... 28 t 1.00 6.00 - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................TATGTTGCTTCTGTCTGGACATAGGC................................................ 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - -
......TCTGTGGGAGCCAAGCA................................................................................................................................................................................................................................... 17 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - -

Antisense strand
GGAGCCTCTGTGGGAGCCAAGCACCTGTGTGTGCAGCCCTGCAGGTTGTGGGAAGGAGGGGAGACAGGGCAGCACAGGAGGGCACCAGCTATGCTTCCTTTTCCTGCCGTTCTGGTCTGCTCGCCTCCATGCTGGCACTCTCTGGGTAGTCGGCTCTTAAATCTGACCTGCGCTGTTATGTTGCTTCTGTCTGGACATAGGCAGCAGTGAAGACGGAGACAAGGACTAGTTGGCTGTAGACACTCTCCCA
..................................................................................................................................(((((((((.....))).)))))).................(((((((((((((....))...))))))).)))).............................................
...............................................................................................................................128...........................................................................206..........................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)