(1)
OTHER.ip
(2)
OTHER.mut
(5)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(24)
TESTES

Sense strand
CCTATCTCAGCCTCTCAAGTGGTGGCGTGCTAGCCCGGGCCACCAGGGCCTGGCTAGCCAACGTCTTCCTGGGAGCAGGACTCTCTCGACTGCTGCCAGGGGCAGGTGTCTGGAAGAGGAAGCATGGGCCACTCTCCTCTGAGCGGAAGTGGGAAGCAGCCCGGGATCCCTGTCTCTCCTGCCCTGTCTCCATCCTGCAGGCCAGTGAGGAGAAGGTGAAGCAACTGGTGAAGGAGATTGGCCGGGAGAT
.................................................((..((..(((((..((((((((.(((((...........))))).))))))..))..)).)))...))..))..(((((..((.((((....((....))))))))..))))).......................................................................................
.................................................50.................................................................................................................165...................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
......................................................................................................................................TCCTCTGAGCGGAAGTGGGAAGCAGCC......................................................................................... 27 1 41.00 41.00 11.00 7.00 9.00 9.00 - - - 2.00 - 1.00 - - - - 1.00 - - - - 1.00 - - - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCGGG..................................................................................... 26 1 35.00 35.00 12.00 9.00 5.00 7.00 - - - - - - 1.00 - - - - - 1.00 - - - - - - -
......................................................................................................................................TCCTCTGAGCGGAAGTGGGAAGCAGCCC........................................................................................ 28 1 22.00 22.00 6.00 5.00 5.00 4.00 - - - 1.00 - 1.00 - - - - - - - - - - - - - -
......................................................................................................................................TCCTCTGAGCGGAAGTGGGAAGCAGC.......................................................................................... 26 1 22.00 22.00 2.00 3.00 3.00 3.00 5.00 3.00 - - - - - 3.00 - - - - - - - - - - - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCGGGA.................................................................................... 27 1 21.00 21.00 6.00 3.00 4.00 4.00 - - 3.00 - - 1.00 - - - - - - - - - - - - - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCGG...................................................................................... 25 1 17.00 17.00 6.00 4.00 4.00 3.00 - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TCTGAGCGGAAGTGGGAAGCAGCCCGG...................................................................................... 27 1 15.00 15.00 5.00 5.00 3.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
......................................................TAGCCAACGTCTTCCTGGGAGCAGGACTC....................................................................................................................................................................... 29 1 6.00 6.00 - - 1.00 - - - - - 4.00 - 1.00 - - - - - - - - - - - - -
.......................................................................................................................................................................................................................GTGAAGCAACTGGTGAAGGAGATTG.......... 25 1 4.00 4.00 - - - - 4.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCGGt..................................................................................... 26 t 3.00 17.00 - - 1.00 - - - 1.00 - - - - - - - - - - - - - 1.00 - - -
.......................................................................................................................................CCTCTGAGCGGAAGTGGGAAGCAGCCC........................................................................................ 27 1 3.00 3.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TCTGAGCGGAAGTGGGAAGCAGCCCGt...................................................................................... 27 t 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................CTCTGAGCGGAAGTGGGAAGCAGCC......................................................................................... 25 1 2.00 2.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
...................................................................................TCTCGACTGCTGCCAGGGGCAGGTGTC............................................................................................................................................ 27 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCGGGAT................................................................................... 28 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TGAGGAGAAGGTGAAGCAACTGGTGA................... 26 1 2.00 2.00 - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCGGGt.................................................................................... 27 t 2.00 35.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................CTCTGAGCGGAAGTGGGAAGCAGC.......................................................................................... 24 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TGAGGAGAAGGTGAAGCAACTGGTG.................... 25 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TCTGAGCGGAAGTGGGAAGCAGCCCG....................................................................................... 26 1 2.00 2.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - 1.00
....................................................................................................................................TCTCCTCTGAGCGGAAGTGGGAAGC............................................................................................. 25 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TCCTCTGAGCGGAAGTGGGAAGCAGCCCG....................................................................................... 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................TCTCCTCTGAGCGGAAGTGGGAAGCA............................................................................................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TCTGAGCGGAAGTGGGAAGCAGCCC........................................................................................ 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................TCCTCTGAGCGGAAGTGGGAAGCAG........................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TGAGGAGAAGGTGAAGCAACTGGTGAAa................. 28 a 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.............................................................................................TGCCAGGGGCAGGTGTCTGGAAGAG.................................................................................................................................... 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................AGGAGAAGGTGAAGCAACTGGTGAA.................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................TGGCTAGCCAACGTCTTCCTGGGAG............................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - -
......................................................................................................................................................................TCCCTGTCTCTCCTGCCCTGTCTCCAT......................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.................................................................................................AGGGGCAGGTGTCTGGAAGAGGAAGC............................................................................................................................... 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - -
................................................................................................................................................GGAAGTGGGAAGCAGCCCGGGA.................................................................................... 22 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................AACTGGTGAAGGAGATTGGCCGG..... 23 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..........................................................................................TGCTGCCAGGGGCAGGTGTCTGGA........................................................................................................................................ 24 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................TGTCTGGAAGAGGAAGCATGGGCCA....................................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCGGa..................................................................................... 26 a 1.00 17.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
............................................................................AGGACTCTCTCGAggcc............................................................................................................................................................. 17 ggcc 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................TCCCTGTCTCTCCTGCCCTGTCTCCATC........................................................ 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.........................................................................................................................................TCTGAGCGGAAGTGGGAAGCAGC.......................................................................................... 23 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCGGaa.................................................................................... 27 aa 1.00 17.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................TTCCTGGGAGCAGGACTCTCTCGACTG.............................................................................................................................................................. 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................TGGGAGCAGGACTCTCTCGACTGCTGC.......................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................ACTCTCCTCTGAGCGGAAGTGGGAAGt............................................................................................. 27 t 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................GAAGCAACTGGTGAAGGAGATTGGC........ 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.....................................................................................................................................CTCCTCTGAGCGGAAGTGGGAAGC............................................................................................. 24 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..............................TAGCCCGGGCCACCAGGGC......................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.......................................................................................................................................CCTCTGAGCGGAAGTGGGAAGCAGCC......................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................CTCTGAGCGGAAGTGGGAAGCAGCCC........................................................................................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................GCCAACGTCTTCCTGGGAGCAGGACTC....................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..................................................TGGCTAGCCAACGTCTTCCTGGGAGC.............................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCGGGATC.................................................................................. 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TGAGGAGAAGGTGAAGCAACTGGTGt................... 26 t 1.00 2.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCcg...................................................................................... 25 cg 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TGAGGAGAAGGTGAAGCAACTGG...................... 23 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................CTGGGAGCAGGACTCTCTCGACTGC............................................................................................................................................................. 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCGGaat................................................................................... 28 aat 1.00 17.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................CTGAGCGGAAGTGGGAAGCAGCCCGG...................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TCCTCTGAGCGGAAGTGGGAAGCAtccc........................................................................................ 28 tccc 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................................................TGCCAGGGGCAGGTGTCTGGAAGAa.................................................................................................................................... 25 a 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................CAGGTGTCTGGAAGAGGAAGCATGGG.......................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.........................................................................................................................................TCTGAGCGGAAGTGGGAAGCAGCCCGa...................................................................................... 27 a 1.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TCCTCTGAGCGGAAGTGGGAAGCggcc......................................................................................... 27 ggcc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TCCTCTGAGCGGAAGTGGGAAGCAGCCt........................................................................................ 28 t 1.00 41.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................AGGAGAAGGTGAAGCAACTGGTGAAG................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TCCTCTGAGCGGAAGTGGGAAGCAaac......................................................................................... 27 aac 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................TCTGGAAGAGGAAGCATGGGCCAC...................................................................................................................... 24 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...........................................................................................................................................TGAGCGGAAGTGGGAAGCAGCCCGGGct................................................................................... 28 ct 1.00 35.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................................CAGGACTCTCTCGACT............................................................................................................................................................... 16 2 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - - - -

Antisense strand
CCTATCTCAGCCTCTCAAGTGGTGGCGTGCTAGCCCGGGCCACCAGGGCCTGGCTAGCCAACGTCTTCCTGGGAGCAGGACTCTCTCGACTGCTGCCAGGGGCAGGTGTCTGGAAGAGGAAGCATGGGCCACTCTCCTCTGAGCGGAAGTGGGAAGCAGCCCGGGATCCCTGTCTCTCCTGCCCTGTCTCCATCCTGCAGGCCAGTGAGGAGAAGGTGAAGCAACTGGTGAAGGAGATTGGCCGGGAGAT
.................................................((..((..(((((..((((((((.(((((...........))))).))))))..))..)).)))...))..))..(((((..((.((((....((....))))))))..))))).......................................................................................
.................................................50.................................................................................................................165...................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
..............................................................................................................................................................................TCTCCTGCCCTGTCTCCATCCTGCA................................................... 25 1 8.00 8.00 - - - - 6.00 - - - - - - - 2.00 - - - - - - - - - - -
...........................................................................CAGGACTCTCTCGACTGCTGCCA........................................................................................................................................................ 23 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
........................................................................GAGCAGGACTCTCTCGACTGCTGCCA........................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.....................................................................................................................................................................................CTGTCTCCATCCTGCAat................................................... 18 at 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - -