| Gene: C330006K01Rik | ID: uc009aip.1_intron_0_0_chr5_142940090_f.5p | SPECIES: mm9 |
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(5) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(1) PIWI.mut |
(1) TDRD1.ip |
(20) TESTES |
| CGTGTCGGCATGTTCTCGGCGGGCGCGGAAAGTCTGCTGCACCAGGCCAGGTCTGCCGATCTGGGGCTGGGGCCACGGGGCGTGAGACGAAGCCGGGGAGGAGCGGGGAGGCGGTGGTCCCGCTGCACGGTTCGGGTCTCCGTGTGGCGCCGGGTCCGGGGCTCAGGGCGACCTGCGTGGAATGTGAGGCGCACAACTCAGCTAAGGGATCCTCCTCATCGTGTCTGGGTCCATGCTAGTGCTGACCCTG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................TGCCGATCTGGGGCTGGGGCCACGG............................................................................................................................................................................ | 25 | 2 | 12.50 | 12.50 | 7.00 | - | - | 0.50 | 0.50 | 2.50 | 0.50 | 1.00 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................TGTGAGGCGCACAACTCAGCTAAGGGAT........................................ | 28 | 1 | 4.00 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................TGTGAGGCGCACAACTCAGCTAAGGGA......................................... | 27 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGTTCTCGGCGGGCGCGGAAAGTCT....................................................................................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | - | - | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGTTCTCGGCGGGCGCGGAAAGTC........................................................................................................................................................................................................................ | 24 | 1 | 3.00 | 3.00 | - | 1.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TGAGACGAAGCCGGGGAGGAGCGG................................................................................................................................................ | 24 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TGAGACGAAGCCGGGGAGGAGCGGG............................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................GGGCGACCTGCGTGGAATGTGAGGC............................................................ | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TGCCGATCTGGGGCTGGGGCCACGa............................................................................................................................................................................ | 25 | a | 1.50 | 0.50 | 1.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................TGTGGCGCCGGGTCCGGGGCTCAGG................................................................................... | 25 | 2 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................TGTGAGGCGCACAACTCAGCTAAGGa.......................................... | 26 | a | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TGCCGATCTGGGGCTGGGGCCAtggg........................................................................................................................................................................... | 26 | tggg | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................CATCGTGTCTGGGTCCATGCTAGTGC........ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................TCAGGGCGACCTGCGTGGAATGTGAGG............................................................. | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................TGTGAGGCGCACAACTCAGCTAAGGGATC....................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................TGTGAGGCGCACAACTCAGCTAAGGG.......................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................TGTGAGGCGCACAACTCAGCTAAGGGc......................................... | 27 | c | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TGGAATGTGAGGCGCACAACTCAGCTA.............................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .....................................................TGCCGATCTGGGGCTGGGGCCACGGG........................................................................................................................................................................... | 26 | 2 | 1.00 | 1.00 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TAAGGGATCCTCCTCATCGTGTCTGGGT.................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TGCACGGTTCGGGTCTCCGTGTGGCG..................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................CGAAGCCGGGGAGGAGCGGGGAGGaa......................................................................................................................................... | 26 | aa | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........GTTCTCGGCGGGCGCGGAAAGTCT....................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................TGTGGCGCCGGGTCCGGGGCTCAGa................................................................................... | 25 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................GTGAGACGAAGCCattt........................................................................................................................................................ | 17 | attt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........................................................................................................................................................................................................TAAGGGATCCTCCTCATCGTGTCTGG...................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................CAACTCAGCTAAGGGAgcct..................................... | 20 | gcct | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TGAGACGAAGCCGGGGAGGAGCGa................................................................................................................................................ | 24 | a | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGTTCTCGGCGGGCGCGGAAAGTCTGC..................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............................................................................GCGTGAGACGAAGCCGGGGAGGAaa.................................................................................................................................................. | 25 | aa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ........................................................................CCACGGGGCGTGAGACGAAGCCGG.......................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................GGCGACCTGCGTGGAATGTGAGGC............................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....TCGGCATGTTCTCGGCGGGCGCGGA............................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...GTCGGCATGTTCTCGGCGGGCGCGGA............................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................AATGTGAGGCGCACAACTCAGCTAAGtga......................................... | 29 | tga | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................GACGAAGCCGGGGAGGAGCGGGGA............................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TGGAATGTGAGGCGCACAACTCAGC................................................ | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TGCCGATCTGGGGCTGGGGCCACG............................................................................................................................................................................. | 24 | 2 | 0.50 | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TGCCGATCTGGGGCTGGGGCCACGGtt.......................................................................................................................................................................... | 27 | tt | 0.50 | 12.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| CGTGTCGGCATGTTCTCGGCGGGCGCGGAAAGTCTGCTGCACCAGGCCAGGTCTGCCGATCTGGGGCTGGGGCCACGGGGCGTGAGACGAAGCCGGGGAGGAGCGGGGAGGCGGTGGTCCCGCTGCACGGTTCGGGTCTCCGTGTGGCGCCGGGTCCGGGGCTCAGGGCGACCTGCGTGGAATGTGAGGCGCACAACTCAGCTAAGGGATCCTCCTCATCGTGTCTGGGTCCATGCTAGTGCTGACCCTG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................................CCTCCTCATCGTGTCTGGGTCCATGCTA............ | 28 | 1 | 28.00 | 28.00 | 13.00 | 2.00 | 4.00 | - | 3.00 | 3.00 | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................CTCCTCATCGTGTCTGGGTCCATGCTA............ | 27 | 1 | 7.00 | 7.00 | 5.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................GATCCTCCTCATCGTGTCTGGGTCCA................. | 26 | 1 | 7.00 | 7.00 | 6.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................GGAATGTGAGGCGCACAACTCAGCTAA............................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - |
| ..................................................................................................................................................................................................................CCTCCTCATCGTGTCTGGGTCCA................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................GGGGCGTGAGACGAAGCCGGGGAGGA.................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................................................................................................................................................................................CCTCATCGTGTCTGGGTCCATGCTA............ | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................GGGGCTCAGGGCGACCTGCGTGGAA.................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................ATCCTCCTCATCGTGTCTGGGTCCA................. | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................CCGTGTGGCGCCGGGTCCGGGGCTCA..................................................................................... | 26 | 2 | 0.50 | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |