(6)
OTHER.mut
(1)
OVARY
(3)
PIWI.ip
(3)
PIWI.mut
(21)
TESTES

Sense strand
TTCTAGGACTCACAATCCTCTTTCTTTTGACAGTGTCTCCCTGGGTTGCCTAGTCTGACCTTGAACTTTTAGTCTCTTTCTCCTCTTAGCCTCTAAACACCAAGAATTCCAGCCTGTGCTACTAGGCCTACAAGGATGGTCTCCTGATGGCCACCGAGGGTCCTAGTGCCATGCACAGCCCTTCTCTCTTCCTTTTGCAGAACTTCACCTCAGGCTCCACTCTGTCGTTCTGGTCTTTTCCACCCGGGGC


Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
...................................................................................TCTTAGCCTCTAAACACCAAGAATTCCAGC......................................................................................................................................... 30 1 6.00 6.00 - - - - 6.00 - - - - - - - - - - - - - - - - -
.............................................................TGAACTTTTAGTCTCTTTCTCCTCTTAGC................................................................................................................................................................ 29 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - -
...............................................................................................AACACCAAGAATTCCAGCCT....................................................................................................................................... 20 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TCCTTTTGCAGAACTTCACCTCAGGC................................... 26 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - -
...........................TGACAGTGTCTCCCTGGGTTGCCTAG..................................................................................................................................................................................................... 26 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TGTCGTTCTGGTCTTTTCCACCCGGGGC 28 1 2.00 2.00 - - - - - - 1.00 - - - 1.00 - - - - - - - - - - -
.....................................................................................TTAGCCTCTAAACACCAAGAATTCCAGC......................................................................................................................................... 28 1 2.00 2.00 - - - - - - 1.00 - 1.00 - - - - - - - - - - - - -
...................................................................................................................................................................................................TGCAGAACTTCACCTCAGGCTCCACT............................. 26 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - -
............................................................TTGAACTTTTAGTCTCTTTCTCCTCTTA.................................................................................................................................................................. 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................TGACCTTGAACTTTTAGTCTCTTTCTCCTC..................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - -
.........................TTTGACAGTGTCTCCCTGGGTTGCC........................................................................................................................................................................................................ 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
...........................................................................................TCTAAACACCAAGAATTCCAGCCTGT..................................................................................................................................... 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TCCACTCTGTCGTTCTGGTCTTTTCCACa...... 29 a 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - -
.............................................................................................TAAACACCAAGAATTCCAGC......................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - -
..............................................................................................................................................................................................................................TGTCGTTCTGGTCTTTTCCACCCG.... 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
...............TCCTCTTTCTTTTGACAGTGTCTCCCT................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - -
...................................................................................TCTTAGCCTCTAAACACCAAGAATTCC............................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00
.............................................................................................TAAACACCAAGAATTCCAGCCTGTGCT.................................................................................................................................. 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
...............TCCTCTTTCTTTTGACAGTGTCTCCC................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - -
.......................................................................................................................................................................................................................TCCACTCTGTCGTTCTGGTC............... 20 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
..........................................................................................................TTCCAGCCTGTGCTACTAGGCCTACAA..................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - -
..........................................................................................................................................................................................................................ACTCTGTCGTTCTGGgga.............. 18 gga 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - -
.....................................................TCTGACCTTGAACTTTTAGTCTCTTTC.......................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................TACTAGGCCTACAAGGATGGTCTCCTG........................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - -
....................................................................................................................TGCTACTAGGCCTACAAGGATGGTCTCC.......................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - -
...TAGGACTCACAATCCTCTTTCTTTTGAC........................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
.............................................................................................TAAACACCAAGAATTCCAGCCTGTGCTACT............................................................................................................................... 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................TCTGTCGTTCTGGTCTTTTCCACCCG.... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
..............................CAGTGTCTCCCTGGGTTGCCTAGT.................................................................................................................................................................................................... 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................TCTGTCGTTCTGGTCTTTTCCACCCGG... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - -
.............................................................................................................................................................................................TCCTTTTGCAGAACTTCACCTCAGGCT.................................. 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - -
.........TCACAATCCTCTTTCTTTTGACAGTGTC..................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - -
.....................................................................................TTAGCCTCTAAACACCAAGAATTCCAGCCT....................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - -
.......................................................TGACCTTGAACTTTTAGTCTCTTTCTC........................................................................................................................................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................TAGCCTCTAAACACCAAGAATTCCAGC......................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................TTCTCCTCTTAGCCTCTAAACACCAAG.................................................................................................................................................. 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
...................................................................................TCTTAGCCTCTAAACACCAAGAATTC............................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................CTTTTGACAGTGTCTCCCT................................................................................................................................................................................................................ 19 3 0.33 0.33 - - - 0.33 - - - - - - - - - - - - - - - - - -

Antisense strand
TTCTAGGACTCACAATCCTCTTTCTTTTGACAGTGTCTCCCTGGGTTGCCTAGTCTGACCTTGAACTTTTAGTCTCTTTCTCCTCTTAGCCTCTAAACACCAAGAATTCCAGCCTGTGCTACTAGGCCTACAAGGATGGTCTCCTGATGGCCACCGAGGGTCCTAGTGCCATGCACAGCCCTTCTCTCTTCCTTTTGCAGAACTTCACCTCAGGCTCCACTCTGTCGTTCTGGTCTTTTCCACCCGGGGC


Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
...........................................................................................................................................TCTCCTGATGGCCACCGAGGGTCCTA..................................................................................... 26 1 29.00 29.00 20.00 2.00 3.00 1.00 1.00 1.00 - - - - 1.00 - - - - - - - - - - -
............................................................................................................................................CTCCTGATGGCCACCGAGGGTCCTA..................................................................................... 25 1 27.00 27.00 6.00 1.00 7.00 - 7.00 3.00 - - 1.00 - 2.00 - - - - - - - - - - -
.......................................................................................................................................................................GCCATGCACAGCCCTTCTCTCTTCCTT........................................................ 27 1 11.00 11.00 9.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - - -
.............................................................................................................................................................................CACAGCCCTTCTCTCTTCCTTTTGCA................................................... 26 1 7.00 7.00 5.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - -
.....................................TCCCTGGGTTGCCTAGTCTGACCTTGAA......................................................................................................................................................................................... 28 1 6.00 6.00 6.00 - - - - - - - - - - - - - - - - - - - - -
......GACTCACAATCCTCTTTCTTTTGACA.......................................................................................................................................................................................................................... 26 1 5.00 5.00 - 1.00 - - - - - 1.00 3.00 - - - - - - - - - - - - -
..............................................................................................................................................................................ACAGCCCTTCTCTCTTCCTTTTGCA................................................... 25 1 5.00 5.00 - 4.00 - - - - 1.00 - - - - - - - - - - - - - - -
..........................................................................................................................................GTCTCCTGATGGCCACCGAGGGTCCTA..................................................................................... 27 1 5.00 5.00 4.00 - - - - - - - - - - - 1.00 - - - - - - - - -
...................................TCTCCCTGGGTTGCCTAGTCTGACCTT............................................................................................................................................................................................ 27 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - - -
.......ACTCACAATCCTCTTTCTTTTGACA.......................................................................................................................................................................................................................... 25 1 3.00 3.00 - - - - - - - - - 2.00 - 1.00 - - - - - - - - - -
..............................................................................TCTCCTCTTAGCCTCTAAACACCAA................................................................................................................................................... 25 1 3.00 3.00 2.00 - - - - - - - - - - 1.00 - - - - - - - - - -
.......................................................................................................................................................................GCCATGCACAGCCCTTCTCTCTTC........................................................... 24 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - -
.........................TTTGACAGTGTCTCCCTGGGTTG.......................................................................................................................................................................................................... 23 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - -
........................................................................................................................................TGGTCTCCTGATGGCCACCGAGGGTCCTA..................................................................................... 29 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................CCATGCACAGCCCTTCTCTCTT............................................................ 22 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................GTCCTAGTGCCATGCACAGCCCTTC.................................................................. 25 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - -
...........ACAATCCTCTTTCTTTTGACAGTGTCTCC.................................................................................................................................................................................................................. 29 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - -
..........................TTGACAGTGTCTCCCTGGGTTGCCTA...................................................................................................................................................................................................... 26 1 2.00 2.00 - - - 1.00 - - - - - - - - - - - 1.00 - - - - - -
............................................GTTGCCTAGTCTGACCTTGAACTTTTA................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - - - - - - - - 1.00 - - - - - 1.00 - - -
.....................................TCCCTGGGTTGCCTAGTCTGACCTTG........................................................................................................................................................................................... 26 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - -
................................................................................................ACACCAAGAATTCCAGCCTGTGCTA................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - -
...............................................................................................................................................................................CAGCCCTTCTCTCTTCCTTTTGCAGA................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................TCTTTCTCCTCTTAGCCTCTAAACACC..................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - -
..................................................................................................................................................................................................................CAGGCTCCACTCTGTCGTTCTGGTCTTT............ 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................CTCCACTCTGTCGTTCTGGTCTTTTC.......... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - -
.....GGACTCACAATCCTCTTTCTTTTG............................................................................................................................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - -
.............................................................................TTCTCCTCTTAGCCTCTAA.......................................................................................................................................................... 19 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................CCCTGGGTTGCCTAGTCTGACCTTGA.......................................................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................GCCATGCACAGCCCTTCTCTCTTCC.......................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................GGGTTGCCTAGTCTGACCTTGAAcggg......................................................................................................................................................................................... 27 cggg 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - -
........................................................................................................................................................................................................AACTTCACCTCAGGCTCCACTCTGTCGTTC.................... 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TCAGGCTCCACTCTGTCGTTCTGGTCTT............. 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - -
.....................................................................TAGTCTCTTTCTCCTCTTAGCCTCTA........................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - -
......................................CCCTGGGTTGCCTAGTCTGACCTTGAA......................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TCAGGCTCCACTCTGTCGTTCTGGTCT.............. 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................................CCAAGAATTCCAGCCTGTGCTACTA.............................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - -
................................................CCTAGTCTGACCTTGAACTTTTAGTCTCT............................................................................................................................................................................. 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
.........................................................................................................................................................................CATGCACAGCCCTTCTCTCTTC........................................................... 22 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................CACCTCAGGCTCCACTCTGTCGTTCTG.................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................CACAGCCCTTCTCTCTTCCTTTT...................................................... 23 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................AGTCTCTTTCTCCTCTTAGCCTCTA........................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 -
.......................................................................................................................................................................................................................CCACTCTGTCGTTCTGGTCTTTTCCAt........ 27 t 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TCCACTCTGTCGTTCTGGTCTTTTC.......... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................CCATGCACAGCCCTTCTCTCTTCCTT........................................................ 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................................................................................................................CCTCAGGCTCCACTCTGTCGTTCTGGTCT.............. 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
......................................................................................................................................ATGGTCTCCTGATGGCCACCGAGGGTCCTAa..................................................................................... 31 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - -
.......................................................................................................................................ATGGTCTCCTGATGGCCACCGAGGGTCCTA..................................................................................... 30 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................CTGGGTTGCCTAGTCTGACCTTGAA......................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
........................................................................................................................................................................CCATGCACAGCCCTTCTCTCTTCC.......................................................... 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................CCTGGGTTGCCTAGTCTGACCTTGAA......................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................................................................................................................ATGCACAGCCCTTCTCTCTTCCTTTa....................................................... 26 a 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................CTCTCTTCCTTTTGCAGAACTTCACC......................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TGCACAGCCCTTCTCTCTTCCTTTTGCA................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................CCACTCTGTCGTTCTGGTCTTTTCCA........ 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................GCTCCACTCTGTCGTTCTGGTCTTTTCCA........ 29 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
...................................................................................................CAAGAATTCCAGCCTGTGCTACTAa.............................................................................................................................. 25 a 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
....................................................................................................................................................................................................GCAGAACTTCACCTCAGGCTCCACTCTGT......................... 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................TCTCTCTTCCTTTTGCAGAACTTCACC......................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................ATGCACAGCCCTTCTCTCTTCCTTT....................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................CTCCTGATGGCCACCGAGGGT......................................................................................... 21 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -