(4)
OTHER.mut
(2)
OVARY
(5)
PIWI.ip
(1)
PIWI.mut
(22)
TESTES

Sense strand
TACCCACTGAGCCATCTCACCAGCCCCCTTTCCTTCCTCTTTAACAGCTGTCATATTAGGTGTTCAGTAAACTCTGTTGTAAGAAGTTCTGGGGTGGCTACCCTGGGGCCAGGGCTGTGCTATCTCCTCAGGTTGGTATATGGATGATGTCACCAGGTTCTGCACTGAGCCTCTGGCTCCCTTCTGCTGTCCCTCTGCAGGTTGTGGACACATCCAAAGGGATTGCAGATGTCCCCGAGTGGTTCAGAGG


Size Perfect hit Total Norm Perfect Norm SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
..................................................................................................................................................................................CCCTTCTGCTGTCCCTCTG..................................................... 19 1 21.00 21.00 - 21.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................TATTAGGTGTTCAGTAAACTCTGTTG........................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - -
..........................................................................TGTTGTAAGAAGTTCTGGGGTGGCT....................................................................................................................................................... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..................................................................................GAAGTTCTGGGGTGaaaa...................................................................................................................................................... 18 aaaa 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................TATGGATGATGTCACCAGGTTCTGCAC..................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
TACCCACTGAGCCATCTCACCAGCCCCCTTTCCTTCCTCTTTAACAGCTGTCATATTAGGTGTTCAGTAAACTCTGTTGTAAGAAGTTCTGGGGTGGCTACCCTGGGGCCAGGGCTGTGCTATCTCCTCAGGTTGGTATATGGATGATGTCACCAGGTTCTGCACTGAGCCTCTGGCTCCCTTCTGCTGTCCCTCTGCAGGTTGTGGACACATCCAAAGGGATTGCAGATGTCCCCGAGTGGTTCAGAGG


Size Perfect hit Total Norm Perfect Norm SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
.CCACTGAGCCATCTCACCAGCCCCaa............................................................................................................................................................................................................................... 26 aa 15.00 0.00 9.00 - - - - 2.00 1.00 - - 1.00 - 2.00 - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCat................................................................................................................................................................................................................................ 26 at 9.00 0.00 8.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
.CACTGAGCCATCTCACCAGCCCCaaa............................................................................................................................................................................................................................... 26 aaa 7.00 0.00 4.00 - - - - 2.00 1.00 - - - - - - - - - - - - - - - - -
CCACTGAGCCATCTCACCAGCCCCaaa............................................................................................................................................................................................................................... 27 aaa 5.00 0.00 3.00 - - - - - - - - - - - 1.00 1.00 - - - - - - - - - -
.CACTGAGCCATCTCACCAGCCCCaga............................................................................................................................................................................................................................... 26 aga 4.00 0.00 1.00 - - 2.00 - 1.00 - - - - - - - - - - - - - - - - - -
CACTGAGCCATCTCACCAGCCCCaaaa............................................................................................................................................................................................................................... 27 aaaa 3.00 0.00 2.00 - - - - - - - - - - - - - 1.00 - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCat................................................................................................................................................................................................................................. 25 at 3.00 0.00 1.00 - - - - - - - - - - - 2.00 - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCgat................................................................................................................................................................................................................................ 27 gat 3.00 0.00 2.00 - - - - - - - - - - - - - - - 1.00 - - - - - - -
CCCACTGAGCCATCTCACCAGCCCatt................................................................................................................................................................................................................................ 27 att 3.00 0.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCgtt................................................................................................................................................................................................................................. 26 gtt 3.00 0.00 - - 2.00 - - 1.00 - - - - - - - - - - - - - - - - - -
CCACTGAGCCATCTCACCAGCCCCaaaa............................................................................................................................................................................................................................... 28 aaaa 3.00 0.00 1.00 - - - - 1.00 1.00 - - - - - - - - - - - - - - - - -
.CCACTGAGCCATCTCACCAGCCCCCaa.............................................................................................................................................................................................................................. 27 aa 2.00 0.00 - - - - - 1.00 - - - - - - - - - 1.00 - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCcat................................................................................................................................................................................................................................ 27 cat 2.00 0.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCata................................................................................................................................................................................................................................. 26 ata 2.00 0.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCcat.................................................................................................................................................................................................................................. 25 cat 2.00 0.00 2.00 - - - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCgat................................................................................................................................................................................................................................. 26 gat 2.00 0.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCaat................................................................................................................................................................................................................................. 26 aat 2.00 0.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCatt................................................................................................................................................................................................................................. 26 att 2.00 0.00 - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - -
.CACTGAGCCATCTCACCAGCCCCaag............................................................................................................................................................................................................................... 26 aag 2.00 0.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
........CCATCTCACCAGCCCCCaag.............................................................................................................................................................................................................................. 20 aag 2.00 0.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCagaa................................................................................................................................................................................................................................. 27 agaa 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCACTGAGCCATCTCACCAGCCCCaag............................................................................................................................................................................................................................... 27 aag 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCggaa................................................................................................................................................................................................................................. 27 ggaa 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
ACCCACTGAGCCATCTCACCAGCgtg.................................................................................................................................................................................................................................. 26 gtg 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........CCATCTCACCAGCCCCCTgaa............................................................................................................................................................................................................................. 21 gaa 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCCCct.............................................................................................................................................................................................................................. 28 ct 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCata................................................................................................................................................................................................................................ 27 ata 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCgtta................................................................................................................................................................................................................................ 28 gtta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....TGAGCCATCTCACCAGCCCCCTcta............................................................................................................................................................................................................................. 25 cta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCatt.................................................................................................................................................................................................................................. 25 att 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCaca................................................................................................................................................................................................................................ 27 aca 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
CACTGAGCCATCTCACCAGCCCCagaa............................................................................................................................................................................................................................... 27 agaa 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCcatc................................................................................................................................................................................................................................. 27 catc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........CCATCTCACCAGCCCCgtg............................................................................................................................................................................................................................... 19 gtg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCggag.................................................................................................................................................................................................................................. 26 ggag 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........TCTCACCAGCCCCCaatt.............................................................................................................................................................................................................................. 18 aatt 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCag................................................................................................................................................................................................................................ 26 ag 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCatta................................................................................................................................................................................................................................ 28 atta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGcaga................................................................................................................................................................................................................................... 25 caga 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........CCATCTCACCAGCCCCCaa.............................................................................................................................................................................................................................. 19 aa 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...TGAGCCATCTCACCAGCCCCCtcga.............................................................................................................................................................................................................................. 25 tcga 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 -
CCACTGAGCCATCTCACCAGCCCCCaaa.............................................................................................................................................................................................................................. 28 aaa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - -
CCCACTGAGCCATCTCACCAGCCCgtag................................................................................................................................................................................................................................ 28 gtag 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCag................................................................................................................................................................................................................................. 25 ag 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCgggg................................................................................................................................................................................................................................ 28 gggg 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
....TGAGCCATCTCACCAGCCCCCTaga............................................................................................................................................................................................................................. 25 aga 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........CCATCTCACCAGCCCCCaca.............................................................................................................................................................................................................................. 20 aca 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - -
CCCACTGAGCCATCTCACCAGCCCCaaaa............................................................................................................................................................................................................................... 29 aaaa 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.CACTGAGCCATCTCACCAGCCCCata............................................................................................................................................................................................................................... 26 ata 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......AGCCATCTCACCAGCCCCCTag............................................................................................................................................................................................................................. 22 ag 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.....GAGCCATCTCACCAGCCCCctt............................................................................................................................................................................................................................... 22 ctt 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..ACTGAGCCATCTCACCAGCCCcgc................................................................................................................................................................................................................................ 24 cgc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....GAGCCATCTCACCAGCCCCCcat.............................................................................................................................................................................................................................. 23 cat 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - -
CACTGAGCCATCTCACCAGCCCCaaat............................................................................................................................................................................................................................... 27 aaat 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCgcta................................................................................................................................................................................................................................. 27 gcta 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCgtt................................................................................................................................................................................................................................ 27 gtt 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCcat................................................................................................................................................................................................................................. 26 cat 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCCat............................................................................................................................................................................................................................... 27 at 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......CCATCTCACCAGCCCCgaag............................................................................................................................................................................................................................... 20 gaag 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.....TGAGCCATCTCACCAGCCCCCTta............................................................................................................................................................................................................................. 24 ta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CACTGAGCCATCTCACCAGCCCCaaga............................................................................................................................................................................................................................... 27 aaga 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........CCATCTCACCAGCCCCCata.............................................................................................................................................................................................................................. 20 ata 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....GAGCCATCTCACCAGCCCCcga............................................................................................................................................................................................................................... 22 cga 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00
..........TCTCACCAGCCCCCaaaa.............................................................................................................................................................................................................................. 18 aaaa 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.....TGAGCCATCTCACCAGCCCCCta.............................................................................................................................................................................................................................. 23 ta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......AGCCATCTCACCAGCCCCCTata............................................................................................................................................................................................................................. 23 ata 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..CACTGAGCCATCTCACCAGCCCCCta.............................................................................................................................................................................................................................. 26 ta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCACTGAGCCATCTCACCAGCCCCaagt............................................................................................................................................................................................................................... 28 aagt 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
CCACTGAGCCATCTCACCAGCCCCCaat.............................................................................................................................................................................................................................. 28 aat 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - -
........GCCATCTCACCAGCCCCCTaa............................................................................................................................................................................................................................. 21 aa 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCCCaaga.............................................................................................................................................................................................................................. 30 aaga 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
CCACTGAGCCATCTCACCAGCCCCaat............................................................................................................................................................................................................................... 27 aat 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.CACTGAGCCATCTCACCAGCCCCagg............................................................................................................................................................................................................................... 26 agg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCACTGAGCCATCTCACCAGCCCCCTaaa............................................................................................................................................................................................................................. 29 aaa 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCagat................................................................................................................................................................................................................................ 28 agat 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCaaca................................................................................................................................................................................................................................ 28 aaca 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..ACTGAGCCATCTCACCAGCCCctc................................................................................................................................................................................................................................ 24 ctc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
ACCCACTGAGCCATCTCACCAGCgagt.................................................................................................................................................................................................................................. 27 gagt 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCgtc.................................................................................................................................................................................................................................. 25 gtc 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - -
CCACTGAGCCATCTCACCAGCCCCatc............................................................................................................................................................................................................................... 27 atc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..ACTGAGCCATCTCACCAGCCctc................................................................................................................................................................................................................................. 23 ctc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CACTGAGCCATCTCACCAGCCCCaagt............................................................................................................................................................................................................................... 27 aagt 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.CACTGAGCCATCTCACCAGCCCCCtaa.............................................................................................................................................................................................................................. 27 taa 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCCata............................................................................................................................................................................................................................... 28 ata 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........CCATCTCACCAGCCCCCtag.............................................................................................................................................................................................................................. 20 tag 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCACTGAGCCATCTCACCAGCCCCaaac............................................................................................................................................................................................................................... 28 aaac 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCcata................................................................................................................................................................................................................................ 28 cata 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCCcatc................................................................................................................................................................................................................................ 28 catc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
CCCACTGAGCCATCTCACCAGCCgtca................................................................................................................................................................................................................................. 27 gtca 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....TGAGCCATCTCACCAGCCCCCTaa............................................................................................................................................................................................................................. 24 aa 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - -
...TGAGCCATCTCACCAGCCCCCtcaa.............................................................................................................................................................................................................................. 25 tcaa 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....AGCCATCTCACCAGCCCCCTagaa............................................................................................................................................................................................................................. 24 agaa 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - -