| Gene: Tctn2 | ID: uc008zqj.1_intron_0_0_chr5_125049252_f | SPECIES: mm9 |
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(1) OTHER.ip |
(4) OTHER.mut |
(5) PIWI.ip |
(2) PIWI.mut |
(1) TDRD1.ip |
(25) TESTES |
| AGGCAGCGAGGATGTCGCTGTGTCTCTGAGTCTGCTGCAGGTCGAGGAAGGTAGGACTCTGGCTGTTCTTGGGAGCGTGGGTGCTGCCAACAGAAATTCTGTTCCCAGCAGAATACGAGTGGGGCCGGCTGTAGACCCTGTGGACCGGTTCTGGATAAGAGAACTTGAAATAAAAGTGACCAACAAGCCAGGCATGATAACACATGCCTTTAATCCCAAAATTGAGGTGGAAATTCGAATATGCAGCCAGCCTGGTTTGCATAATAAAACGTGTTTTGTCTTGTTTTTAAGGAAAATAAAAGGCCAGCTAGCTCCCCTGAGATTCCCACACAGCACCTCAGAGTTCTCCTAAGAACAGCAGTCTTTTTTTTTTTTTTGTCCCATTTGACAAATGAGACCTACTGTTTGACCAGTCTCATGCAGCTTGTCTGGGGGAGAGGGATTCCTACCCCAGGATACTCGACTCACCGTAGCTACCGCACCCTGATGCCTCAAATTCTAATTTCTCGCTTAGGAGTGTTGCCAGTTCCTACTTGTGGCGGCCGCCGCAATGAGACAGTGGAT ..................................................................................................................................................................................................................................................................................................................................................................................................................................(((((((..(((((((...(((....))).))))))).....((......)).))))...)))..((((.((...((((....))))...)))))).................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................415................................................................................................514................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT4() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTACCCCAGGATACTCGACTCACCGTAGCTACCGCACCCTGATGCCTC....................................................................... | 52 | 1 | 66.00 | 66.00 | 66.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGGAAGGa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | a | 19.00 | 5.00 | - | 6.00 | 7.00 | 3.00 | - | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..................TGTGTCTCTGAGTCTGCTGCAGGTCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 5.00 | 5.00 | - | 1.00 | - | 2.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGGAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 5.00 | 5.00 | - | 2.00 | - | - | - | - | - | - | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................TGTGTCTCTGAGTCTGCTGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 22 | 1 | 4.00 | 4.00 | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGGAAGGat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | at | 3.00 | 5.00 | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TCTGAGTCTGCTGCAGGTCGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................TGTGTCTCTGAGTCTGCTGCAGGTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..........................................CGAGGAAGGTAGGACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 18 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGGAAGGagt.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | agt | 2.00 | 5.00 | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGGAAGGag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | ag | 2.00 | 5.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................TGTGTCTCTGAGTCTGCTGCAGGTCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGGAAGGaaa.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | aaa | 1.00 | 5.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAGTTCCTACTTGTGGCGGC..................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................TCTTGGGAGCGTGcgg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 16 | cgg | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................TGTGTCTCTGAGTCTGCTGCAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........GGATGTCGCTGTGTCTCTGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................ACTCTGGCTGTTCTTGGGAGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................TGTGTCTCTGAGTCTGCTGCAGGTCGt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | t | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................GTAGGACTCTGGCTGTTCTTGGGggc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | ggc | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGACTCTGGCTGTTCTTGGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .................................GCTGCAGGTCGAGGAAGGTAGGACTCTGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGGAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..................TGTGTCTCTGAGTCTGCTGCAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................TGTGTCTCTGAGTCTGCTGCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................TGTGTCTCTGAGTCTGCTGCAGGTt......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | t | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGGAAGGTt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | t | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................TCTCTGAGTCTGCTGCAGGTCGAGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..................TGTGTCTCTGAGTCTGCTGCAGGTCGAa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | a | 1.00 | 5.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGTCTGCTGCAGGTCGAGGAAGGTtta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 29 | tta | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| AGGCAGCGAGGATGTCGCTGTGTCTCTGAGTCTGCTGCAGGTCGAGGAAGGTAGGACTCTGGCTGTTCTTGGGAGCGTGGGTGCTGCCAACAGAAATTCTGTTCCCAGCAGAATACGAGTGGGGCCGGCTGTAGACCCTGTGGACCGGTTCTGGATAAGAGAACTTGAAATAAAAGTGACCAACAAGCCAGGCATGATAACACATGCCTTTAATCCCAAAATTGAGGTGGAAATTCGAATATGCAGCCAGCCTGGTTTGCATAATAAAACGTGTTTTGTCTTGTTTTTAAGGAAAATAAAAGGCCAGCTAGCTCCCCTGAGATTCCCACACAGCACCTCAGAGTTCTCCTAAGAACAGCAGTCTTTTTTTTTTTTTTGTCCCATTTGACAAATGAGACCTACTGTTTGACCAGTCTCATGCAGCTTGTCTGGGGGAGAGGGATTCCTACCCCAGGATACTCGACTCACCGTAGCTACCGCACCCTGATGCCTCAAATTCTAATTTCTCGCTTAGGAGTGTTGCCAGTTCCTACTTGTGGCGGCCGCCGCAATGAGACAGTGGAT ..................................................................................................................................................................................................................................................................................................................................................................................................................................(((((((..(((((((...(((....))).))))))).....((......)).))))...)))..((((.((...((((....))))...)))))).................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................415................................................................................................514................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT4() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .GGCAGCGAGGATGTCGCTGTGTCTCTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................GCTGCCAACAGAAATTCTGTTCCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ....................................................................................................................................................................................................................................................................................................................................CCCACACAGCACCTCA................................................................................................................................................................................................................................ | 16 | 12 | 0.08 | 0.08 | - | - | - | - | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |