| Gene: Ddx55 | ID: uc008zqc.1_intron_0_0_chr5_125003049_f.5p | SPECIES: mm9 |
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(5) OTHER.mut |
(2) OVARY |
(2) PIWI.ip |
(1) PIWI.mut |
(24) TESTES |
| TGCTCGGTGCACTGCGCGAGTTGGGCTTCCCGCACATGACGCCGGTGCAGGTATCGGTCCCGCGGGGGAAGCGGGGCTGGGCTGTCAGCCGCTCCAGTGCAGCCGCGGGCGTCAGGGAGAGAGCCCTTTCGGGGCTGGGTTCCTTACGCCGTCAGGATCTCAGACTTGGCAGTGCCGGAGGAGTCTTCGATATCCTCCCCGGGGGTGGGGTGAGGTAGTGTCTCAGCTCCTCCTGCCTGCTCTAGCTGGA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR037897(GSM510433) ovary_rep2. (ovary) | SRR051940(GSM545784) 18-32 nt total small RNAs (Mov10l+/-). (testes) | SRR037903(GSM510439) testes_rep4. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................GAAGCGGGGCTGGGCgc...................................................................................................................................................................... | 17 | gc | 92.50 | 17.00 | 34.00 | 17.50 | 15.75 | 3.50 | 2.75 | 12.25 | 4.25 | 0.75 | 0.50 | - | 0.25 | 0.75 | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................GAAGCGGGGCTGGGCgcgc.................................................................................................................................................................... | 19 | gcgc | 87.25 | 17.00 | 38.75 | 8.75 | 20.50 | 4.75 | 4.00 | 2.50 | 4.25 | - | 1.50 | 0.50 | - | - | - | - | - | - | - | 0.50 | - | - | 0.25 | 0.50 | - | 0.25 | 0.25 | - |
| ...................................................................GAAGCGGGGCTGGGCgcg..................................................................................................................................................................... | 18 | gcg | 62.00 | 17.00 | 27.25 | 6.75 | 4.50 | 4.50 | 9.00 | 2.75 | 4.50 | 0.50 | 0.75 | 0.25 | - | - | 0.25 | - | - | - | - | 0.25 | 0.25 | - | 0.25 | - | 0.25 | - | - | - |
| ...................................................................GAAGCGGGGCTGGGCg....................................................................................................................................................................... | 16 | g | 29.00 | 17.00 | 12.25 | 8.50 | 1.50 | - | 2.75 | - | 1.00 | 1.50 | - | - | - | - | - | 1.00 | - | - | - | - | - | 0.50 | - | - | - | - | - | - |
| ...................................................................GAAGCGGGGCTGGGC........................................................................................................................................................................ | 15 | 4 | 17.00 | 17.00 | 3.00 | 6.75 | 2.00 | 1.75 | 1.50 | 0.50 | 1.00 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................CAGGATCTCAGACTTGGCAGTGCCGGA....................................................................... | 27 | 1 | 10.00 | 10.00 | - | 1.00 | - | 9.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................GGAAGCGGGGCTGGGCgcg..................................................................................................................................................................... | 19 | gcg | 3.00 | 0.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................GAAGCGGGGCTGGGCgcgt.................................................................................................................................................................... | 19 | gcgt | 1.00 | 17.00 | 0.25 | - | - | 0.25 | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 |
| ............TGCGCGAGTTGGGCTTCCCGCACATGAC.................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................CTTTCGGGGCTGGGTcatc.......................................................................................................... | 19 | catc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................GGGAAGCGGGGCTGGGCgcg..................................................................................................................................................................... | 20 | gcg | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................AAGCGGGGCTGGGCTcgc.................................................................................................................................................................... | 18 | cgc | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................GGAAGCGGGGCTGGGCg....................................................................................................................................................................... | 17 | g | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................AAGCGGGGCTGGGagcg..................................................................................................................................................................... | 17 | agcg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................GGAAGCGGGGCTGGGCgcgc.................................................................................................................................................................... | 20 | gcgc | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................GAAGCGGGGCTGGGCga...................................................................................................................................................................... | 17 | ga | 0.25 | 17.00 | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................GAAGCGGGGCTGGGCgca..................................................................................................................................................................... | 18 | gca | 0.25 | 17.00 | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................GAAGCGGGGCTGGGCaaa..................................................................................................................................................................... | 18 | aaa | 0.25 | 17.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - |
| TGCTCGGTGCACTGCGCGAGTTGGGCTTCCCGCACATGACGCCGGTGCAGGTATCGGTCCCGCGGGGGAAGCGGGGCTGGGCTGTCAGCCGCTCCAGTGCAGCCGCGGGCGTCAGGGAGAGAGCCCTTTCGGGGCTGGGTTCCTTACGCCGTCAGGATCTCAGACTTGGCAGTGCCGGAGGAGTCTTCGATATCCTCCCCGGGGGTGGGGTGAGGTAGTGTCTCAGCTCCTCCTGCCTGCTCTAGCTGGA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR037897(GSM510433) ovary_rep2. (ovary) | SRR051940(GSM545784) 18-32 nt total small RNAs (Mov10l+/-). (testes) | SRR037903(GSM510439) testes_rep4. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................GCTGGGTTCCTTACGCCGTCAGGATCTCA........................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................GGTGAGGTAGTGTagta............................. | 17 | agta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................CCGTCAGGATCTCAaaaa........................................................................................ | 18 | aaaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |