| Gene: Sh2b3 | ID: uc008zkg.1_intron_5_0_chr5_122269218_r.5p | SPECIES: mm9 |
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(3) OTHER.mut |
(4) PIWI.ip |
(1) PIWI.mut |
(1) TDRD1.ip |
(21) TESTES |
| CTCCAGGTCCGGGCCACAGCCACTTTCTGCAGCTCTTCGATCCGCCCAAGGTGAGCACCTGGAGAGTGTGGTGCTACAGCGTGCCCACAGCTTCAATAGGTACCCTGTGGGCCCGACTCTGCCAGGACAGTGAGTCTGCGACCCCGGAGAGTTGAAGGACTGTTTGTGCTGTTGATGGGTTGGAGCATATTGGTTCAAAGTCTTTGAAAGTCCAGATATACCTAACGTGGACATTGGAGCTTTCAGGAAG ...............................................................................................(((((...))))).((((((..((...(((.((((..(((((.((((........))))..)))))..)))).)))..))))))))..................................................................... ...........................................................................................92........................................................................................182.................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....AGGTCCGGGCCACAGCCACTTTCTGCAG.......................................................................................................................................................................................................................... | 28 | 1 | 9.00 | 9.00 | 9.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................TGAAGGACTGTTTGTGCTGTTGATGG........................................................................ | 26 | 1 | 4.00 | 4.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 |
| ...........................TGCAGCTCTTCGATCCGCCCAAGGTGA.................................................................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................................................................TGCGACCCCGGAGAGTTGAAGGACTGT....................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TTTGAAAGTCCAGATATACCTAACGTG..................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .......................................................................................................................................................................GCTGTTGATGGGTTGGAGCATATTGG......................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................TACCTAACGTGGACATTGGAGCTTTCAG.... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TTTGAAAGTCCAGATATACCTAACGTGG.................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TTCGATCCGCCCAAGGTGAGCACCTGG............................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................TACCTAACGTGGACATTGGAGCTTTC...... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................TGGGTTGGAGCATATTGGTTCAAAGTC................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TGAGTCTGCGACCCCGGAGAGTTGA............................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............................................................................................................................................................................TGATGGGTTGGAGCATATTGGTTCAAAG.................................................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TAACGTGGACATTGGAGCTTTCAGGAAGa | 29 | a | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................TGAAGGACTGTTTGTGCTGTTGATG......................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TGCAGCTCTTCGATCCGCCCAAGGTta.................................................................................................................................................................................................... | 27 | ta | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................AGAGTGTGGTGCTACAGCGTGCCCACAGC............................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TGCAGCTCTTCGATCCGCCCAAGagc..................................................................................................................................................................................................... | 26 | agc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................TAGGTACCCTGTGGGCCCGACTCTG................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................TGTTTGTGCTGTTGATGGGTTGGAGC................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........CCGGGCCACAGCCACTTTCTGCAGCTC....................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ............................................................................................................................................................................TGATGGGTTGGAGCATATTGGTTCA..................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................TAGGTACCCTGTGGGCCCGACTCTGC................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................TATACCTAACGTGGACATTGGAGCTT........ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................TCTGCCAGGACAGTGAGTCTGCGACCCC......................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................CAGATATACCTAACGTGGACATTGGAGC.......... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................TCCAGATATACCTAACGTGGACATTGGAGC.......... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................TGATGGGTTGGAGCATATTGGTTCAA.................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................GAAGGACTGTTTGTGCTGTTGATGGGTTGt................................................................... | 30 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................TGATGGGTTGGAGCATATTGGTTCAAA................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................ACTGTTTGTGCTGTTGATGGGTTGGAG................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .......................................................................................................................................................TTGAAGGACTGTTTGTGCTGTTGATG......................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................GAGTTGAAGGACTGTTTGTGCTGTTG............................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CTCCAGGTCCGGGCCACAGCCACTTTCTGCAGCTCTTCGATCCGCCCAAGGTGAGCACCTGGAGAGTGTGGTGCTACAGCGTGCCCACAGCTTCAATAGGTACCCTGTGGGCCCGACTCTGCCAGGACAGTGAGTCTGCGACCCCGGAGAGTTGAAGGACTGTTTGTGCTGTTGATGGGTTGGAGCATATTGGTTCAAAGTCTTTGAAAGTCCAGATATACCTAACGTGGACATTGGAGCTTTCAGGAAG ...............................................................................................(((((...))))).((((((..((...(((.((((..(((((.((((........))))..)))))..)))).)))..))))))))..................................................................... ...........................................................................................92........................................................................................182.................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................CACTTTCTGCAGCTCTTCG................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................GTGCTACAGCGTGCCCACAGCTTCAATA........................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................TGCTACAGCGTGCCCACAGCTTCAATAac........................................................................................................................................................ | 29 | ac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |