| Gene: Sgsm1 | ID: uc008yud.1_intron_15_0_chr5_113709415_r.3p | SPECIES: mm9 |
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(3) OTHER.mut |
(1) OVARY |
(2) PIWI.ip |
(3) PIWI.mut |
(19) TESTES |
| CACGCTGGACTTCTAGGCTAGAGACTTGGCAGAGTTGAGCTCCGGTAACTTCATAGACAGGGAGAAGGGGTTTTACTCGGAAAGTTGTGGTGGTAGGATGAAAGAGGAGGATGGCTGAGCAGGCTCGGGACACAGATGCTGGGACAAGTAGGTCTTGGTGACCTCTGGCTTCCCACAGTCTCCCTCACTTCCCCTTCCAGTGTCTACTGGGACTACGCTGTGACCATCCGCTTAGAGGAGATAGTTTACC ................................................((((........)))).....(((((.(((.....(((.((....)).)))....))).)))))..(((((....))))).......................................................................................................................... ................................................49..............................................................................129....................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT4() Testes Data. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................TGGCTGAGCAGGCTCGGGACACAGAT................................................................................................................. | 26 | 1 | 5.00 | 5.00 | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................TAGAGACTTGGCAGAGTTGAGCTCCa.............................................................................................................................................................................................................. | 26 | a | 3.00 | 0.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TGAAAGAGGAGGATGGCTGAGCAGGCT............................................................................................................................. | 27 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..................................................................................................TGAAAGAGGAGGATGGCTGAGCAG................................................................................................................................ | 24 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .......................................................................................TGGTGGTAGGATGAAAGAGGAGGATG......................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................TAGACAGGGAGAAGGGGTTTTACTCG........................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................GGCTCGGGACACAGATGCTGGGACAAG...................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................TGAGCAGGCTCGGGACACAGATGCTG............................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TTTACTCGGAAAGTTGTGGTGGTA........................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...................................TGAGCTCCGGTAACTTCATAGACAGGGAc.......................................................................................................................................................................................... | 29 | c | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................................................TAGACAGGGAGAAGGGGTTTTACTCGGAAA....................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................................................TGAAAGAGGAGGATGGCTGAGCA................................................................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TGGTGGTAGGATGAAAGAGGAGG............................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................GAGCAGGCTCGGGACACAGATGCTGG............................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................TACTGGGACTACGCTGTGACCATCCGC................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TGAAAGAGGAGGATGGCTGAGCAttt.............................................................................................................................. | 26 | ttt | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................GCAGGCTCGGGACACAGATGCTGGGA.......................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..................................................................................................TGAAAGAGGAGGATGGCTGAGCAGGC.............................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................GTAACTTCATAGACAGGGA........................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................GTGACCATCCGCTTAGAGGAGATAGT..... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................GATGCTGGGACAAGTAGGTCTTGGTGACCTC..................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................AAGTTGTGGTGGTAGGAT....................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................TAGGATGAAAGAGGAGGATGGCTGAG................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TGAAAGAGGAGGATGGCTGAGCAGG............................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................................................................................................GCAGGCTCGGGACACAGATGCTGGG........................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............TAGGCTAGAGACTTGGCAGAGTTGAaat................................................................................................................................................................................................................. | 28 | aat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .......................................................................................TGGTGGTAGGATGAAAGAGGAGGAT.......................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....CTGGACTTCTAGGCTAGAGACTTGGC............................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| CACGCTGGACTTCTAGGCTAGAGACTTGGCAGAGTTGAGCTCCGGTAACTTCATAGACAGGGAGAAGGGGTTTTACTCGGAAAGTTGTGGTGGTAGGATGAAAGAGGAGGATGGCTGAGCAGGCTCGGGACACAGATGCTGGGACAAGTAGGTCTTGGTGACCTCTGGCTTCCCACAGTCTCCCTCACTTCCCCTTCCAGTGTCTACTGGGACTACGCTGTGACCATCCGCTTAGAGGAGATAGTTTACC ................................................((((........)))).....(((((.(((.....(((.((....)).)))....))).)))))..(((((....))))).......................................................................................................................... ................................................49..............................................................................129....................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT4() Testes Data. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................................................CTGTGACCATCCGCTgt.................. | 17 | gt | 8.00 | 0.00 | 5.00 | - | - | - | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................CTGTGACCATCCGCTTgt................. | 18 | gt | 4.00 | 0.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................CTGTGACCATCCGCTgtt.................. | 18 | gtt | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................CCCACAGTCTCCCTCAC.............................................................. | 17 | 3 | 1.67 | 1.67 | - | - | 1.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................CTGTGACCATCCGCTgc.................. | 17 | gc | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................CTTCCCACAGTCTCCggg................................................................... | 18 | ggg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................CTGTGACCATCCGCTTAtt................ | 19 | tt | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................CTGTGACCATCCGCTTgttc................. | 20 | gttc | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................GCTTCCCACAGTCTCag.................................................................... | 17 | ag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |