| Gene: Pdgfra | ID: uc008xuc.1_intron_20_0_chr5_75585362_f.5p | SPECIES: mm9 |
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(5) OTHER.mut |
(1) PIWI.ip |
(1) PIWI.mut |
(17) TESTES |
| ACCACCTCAGCGAGATAGTGGAGAACCTGTTGCCGGGACAATACAAGAAGGTTGGTTCGAGCCTGTGACAGTGGGCAGGAGGAGGCGGGAAGGAGGAGAGACTAGTGAGCAGTTATGCCAACAAGCAGAGCTGCTCTGAGCTGTTTGAAAGGAACGCTTTCAAAGGAGGACACGGATTGTGTGATCTTGTGACCAGGGCTTTGGGGAGTGCTCTATAGGACCCCAGTAGCACTGATGAATGAGAGCCCCT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTTGGTTCGAGCCTGTGACAGTGGGCAGGAGG........................................................................................................................................................................ | 32 | 1 | 17.00 | 17.00 | 9.00 | - | - | 7.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................GTTGGTTCGAGCCTGTGACAGTGGGCAGG........................................................................................................................................................................... | 29 | 1 | 11.00 | 11.00 | 11.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................CGGGACAATACAAGAAG........................................................................................................................................................................................................ | 17 | 1 | 8.00 | 8.00 | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................CCGGGACAATACAAGAAG........................................................................................................................................................................................................ | 18 | 1 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTTGGTTCGAGCCTGTGACAGTGGGCAGGAGGA....................................................................................................................................................................... | 33 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - |
| .............................................................................................................................................................................................................GAGTGCTCTATAGGACCCCAGT....................... | 22 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........AGCGAGATAGTGGAGAACC............................................................................................................................................................................................................................... | 19 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TCAGCGAGATAGTGGAGAACCTGTT........................................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................ATTGTGTGATCTTGTGACCAGGGCTTTGG.............................................. | 29 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....CTCAGCGAGATAGTGGAG................................................................................................................................................................................................................................... | 18 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..CACCTCAGCGAGATAGTGGA.................................................................................................................................................................................................................................... | 20 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTTGGTTCGAGCCTGTGACAGTGGGCAGGA.......................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...........................................................................................................................AGCAGAGCTGCTCTGAGCTGTTTG....................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..................TGGAGAACCTGTTGCCGGG..................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TCAGCGAGATAGTGGAGAACCTGTTGCCG....................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................GTTGGTTCGAGCCTGTGACAGTGGGCAGGAGGAG...................................................................................................................................................................... | 34 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................AAAGGAACGCTTTCAAAGGAGGACAC............................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................GTTGGTTCGAGCCTGTGACAGTGGGaagg........................................................................................................................................................................... | 29 | aagg | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................TGCCAACAAGCAGAGCTGCTCTGAGCTGT.......................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................GTTGGTTCGAGCCTGTGA...................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTTGGTTCGAGCCTGTGACAGTGGG............................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ........................................................................................GAAGGAGGAGAGACgtgt................................................................................................................................................ | 18 | gtgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...............TAGTGGAGAACCTGTTGCCGGGACAATACAAGA.......................................................................................................................................................................................................... | 33 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................GCCGGGACAATACAAGAAGa....................................................................................................................................................................................................... | 20 | a | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...ACCTCAGCGAGATAGTGGAGAACCTGTTGC......................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ACCACCTCAGCGAGATAGTGGAGAACCTGTTGCCGGGACAATACAAGAAGGTTGGTTCGAGCCTGTGACAGTGGGCAGGAGGAGGCGGGAAGGAGGAGAGACTAGTGAGCAGTTATGCCAACAAGCAGAGCTGCTCTGAGCTGTTTGAAAGGAACGCTTTCAAAGGAGGACACGGATTGTGTGATCTTGTGACCAGGGCTTTGGGGAGTGCTCTATAGGACCCCAGTAGCACTGATGAATGAGAGCCCCT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................GCCGGGACAATActgt............................................................................................................................................................................................................... | 16 | ctgt | 5.00 | 0.00 | - | - | - | - | 3.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................CCCCAGTAGCACTGgcgg................ | 18 | gcgg | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................ACAGTGGGCAGGAGGAgg....................................................................................................................................................................... | 18 | gg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |