(4)
OTHER.mut
(6)
PIWI.ip
(1)
PIWI.mut
(25)
TESTES

Sense strand
GAAGGGGTAAAAGCAACGTGTCCTGGGAGCTAATCATGCCCTAGGTTACCAAGACAAGGCTCAGGGCTGGCAACAGAAAGGAAATAGCTCTTCCCTTCCCCAAGCACAGGGAGAGCGCTGTGGTGTTCAGATGGGTTACCATGGGAGGAGGAGAGCCCCCAGCATCCAGGTCTTCCCCTGAGATGTCTTTTCTTCTGCAGGCTACTACATGGGCATGTGCTTTGCAGCCTCAGAAAAGCAGCTCTACTCC


Size Perfect hit Total Norm Perfect Norm GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR037903(GSM510439)
testes_rep4. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
..............................................TACCAAGACAAGGCTCAGGGCTGGCAAC................................................................................................................................................................................ 28 1 7.00 7.00 1.00 2.00 - 2.00 - 1.00 - - - - - - 1.00 - - - - - - - - - - - -
..............................................TACCAAGACAAGGCTCAGGGCTGGCAACA............................................................................................................................................................................... 29 1 7.00 7.00 1.00 - - - 4.00 - - - - - - - - - - 1.00 1.00 - - - - - - - -
..................................................................................................................................................................................TGAGATGTCTTTTCTTCTGCAGGCTAC............................................. 27 1 7.00 7.00 4.00 2.00 - - - - - - - - - - - 1.00 - - - - - - - - - - -
..............................................................................................................................................................................................................................TGCAGCCTCAGAAAAGCAGCTCTACT.. 26 1 5.00 5.00 - - - - - - 5.00 - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGAGATGTCTTTTCTTCTGCAGGCTACT............................................ 28 1 5.00 5.00 - 1.00 - - - - - 1.00 - - - 1.00 - - 1.00 - - - 1.00 - - - - - -
.........................................TAGGTTACCAAGACAAGGCTCAGGGC....................................................................................................................................................................................... 26 1 4.00 4.00 - - - 1.00 - 3.00 - - - - - - - - - - - - - - - - - - -
..............................................TACCAAGACAAGGCTCAGGGCTGGCA.................................................................................................................................................................................. 26 1 3.00 3.00 - 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TACTACATGGGCATGTGCTTTGCAGC...................... 26 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................TCTTCTGCAGGCTACTACATGGGCAT.................................. 26 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TACATGGGCATGTGCTTTGCAGCCTCAGA................ 29 1 2.00 2.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGAGATGTCTTTTCTTCTGCAGGC................................................ 24 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................................................TCAGGGCTGGCAACAGAAAGGAAATAGCT................................................................................................................................................................. 29 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................GACAAGGCTCAGGGCTGGCAACAGAA............................................................................................................................................................................ 26 1 2.00 2.00 - 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
..............................................TACCAAGACAAGGCTCAGGGCTGGCAA................................................................................................................................................................................. 27 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGAGATGTCTTTTCTTCTGCAGGCTA.............................................. 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................................................TCAGGGCTGGCAACAGAAAGGAAATAGt.................................................................................................................................................................. 28 t 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................TGGTGTTCAGATGGGTTACCATGGGA........................................................................................................ 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................ACAGAAAGGAAATAGCTCTTCCCTT......................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.........................................................................................................................................................................................................CTACTACATGGGCATGTGCTT............................ 21 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGAGATGTCTTTTCTTCTGCAGGCTt.............................................. 26 t 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................TCCCCTGAGATGTCTTTTCTTCTGCAG.................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.......................................................................................................................................................................................................................TGTGCTTTGCAGCCTCAGAAAAGCAGC........ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TTCTTCTGCAGGCTACTACATGGGCATG................................. 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................................................AGACAAGGCTCAGGGCTGGCAACAGAAA........................................................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TACATGGGCATGTGCTTTGCAGCCTCAGt................ 29 t 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................................................................TACCATGGGAGGAGGAGAGCCCCCAGC....................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.........................................TAGGTTACCAAGACAAGGCTCAGGGCTGGC................................................................................................................................................................................... 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGAGATGTCTTTTCTTCTGCAGGCTACTA........................................... 29 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TACATGGGCATGTGCTTTGCAGCCTCAG................. 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..........................................................................................................................................................................................................TACTACATGGGCATGTGCTTTGCAGCCTCAt................. 31 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..................................................................................................................................................................................TGAGATGTCTTTTCTTCTGCAGGCTAt............................................. 27 t 1.00 2.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TACTACATGGGCATGTGCTTTGCAGCga.................... 28 ga 1.00 3.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................CCCTGAGATGTCTTTTCTTCTGCAaaa................................................ 27 aaa 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TACTACATGGGCATGTGCTT............................ 20 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.....................................................................GCAACAGAAAGGAAATAGCTCTTCCCTT......................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.................................................................................................................................................................................................................TGGGCATGTGCTTTGCAGCCTCAGAAAAGt........... 30 t 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
................................................................................................................................................................................................TTCTGCAGGCTACTACATGGGCATG................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TGAGATGTCTTTTCTTCTGCAGGCT............................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................CAACAGAAAGGAAATAGCTCTTCCCT.......................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.........................................TAGGTTACCAAGACAAGGCTCAGGGCTGG.................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.............................................................................................................................................................................................................TACATGGGCATGTGCTTTGCAGCCTCA.................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................AAGACAAGGCTCAGGGCTGGCAACAG.............................................................................................................................................................................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................TGGCAACAGAAAGGAAATAGCTCTTC............................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...................................................AGACAAGGCTCAGGGCTGGCAACAGA............................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................TTACCAAGACAAGGCTCAGGGCTGGCAA................................................................................................................................................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................TAGGTTACCAAGACAAGGCTCAGGGCT...................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.........................................................................CAGAAAGGAAATAGCTCTT.............................................................................................................................................................. 19 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TGCAGGCTACTACATGGGCATGTGC.............................. 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................................................................................................................................TTCTTCTGCAGGCTACTACATGGGCAT.................................. 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.....................................................ACAAGGCTCAGGGCTGGCAACAGAAAG.......................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.........................................TAGGTTACCAAGACAAGGCTCAGGGCTG..................................................................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............GCAACGTGTCCTGGGAGCTAATCATGC................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
..............................TAATCATGCCCTAGGTTACCAAGACAA................................................................................................................................................................................................. 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................TCAGGGCTGGCAACAGAAAGGAAATAGC.................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.............................................................CAGGGCTGGCAACAGAAAGGAAATAGCT................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
............................................................................................................................................................................................................................TTTGCAGCCTCAGAAAAGCAGCTCTAC... 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................AGGCTACTACATGGGCATGTGCTTTt.......................... 26 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
............................................................................................................................................................................................TTTCTTCTGCAGGCTACTACATGGGCAT.................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
GAAGGGGTAAAAGCAACGTGTCCTGGGAGCTAATCATGCCCTAGGTTACCAAGACAAGGCTCAGGGCTGGCAACAGAAAGGAAATAGCTCTTCCCTTCCCCAAGCACAGGGAGAGCGCTGTGGTGTTCAGATGGGTTACCATGGGAGGAGGAGAGCCCCCAGCATCCAGGTCTTCCCCTGAGATGTCTTTTCTTCTGCAGGCTACTACATGGGCATGTGCTTTGCAGCCTCAGAAAAGCAGCTCTACTCC


Size Perfect hit Total Norm Perfect Norm GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR037903(GSM510439)
testes_rep4. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
....................................................................................................................GCTGTGGTGTTCAGATGGGTTACCA............................................................................................................. 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -