chr5:24071772 24072346 -
(1)
OTHER.ip 		(6)
OTHER.mut 		(7)
PIWI.ip 		(2)
PIWI.mut 		(32)
TESTES

Sense strand
TTGAGGGTGGAATGATGCTAGTCAGCCATGACTTCAGACTCATCCAGCAGGTGAGGTGTGGCCTGAGGCACAGCTGTGGTACATAGAGGGTCTAACGACATCTGCTAAATTCAGAGAAGGGGCTCAGGTCCACGTGGCCAGATCTGATGATTCAGGATAGTAGTTAACTTGGTAGAGAGGACCCAAATGAGGAAGGCGCTCTTGCTACTCTTTCGAGATTCTTCGGCCAAGTAAGTATTGTAGTAAGGACTTGGATTAAGAGGAGGAAGCTTGGCTACAGGTCATGAGGCCTCTGAATGATCAGGAGCCTGTAACTGGGAGCCTGACAGTACAGGGTGGCACAGCAGGGTCTACCTTAGAAGATTCCAGAAGGCTCCAAAGAGCCAGAGCCTGTTTAGTAGTGAGAGTGAGCTGGATGTAGTTTTGGTGAGGCCTCAGGAGAAGCCGCTACTTTTGGGAAGCCCGGTAGTGGTAGTGGGGAGGGTGCCACCGACTGGCCAGATCAAGTCCAGCCTCTGCTTCCAGGTTGCACAGGAGATTTGGGTCTGTGAGAAACAGACAATCACCAAGTGGCC
.........................................................................................................................................................................................................................................((..((.((((...((((((.....((..(((....)))..)).))))))...((((..((((....))))..))))...)))).))..))...........................................................................................................................................................................................................................................................
........................................................................................................................................................................................................................................233........................................................................................324.........................................................................................................................................................................................................................................................
 Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		SRR028731(GSM400968)
Mili-wt-associated. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes) 		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes) 		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
............................TGACTTCAGACTCATCCAGCAGGTtgc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 27 tgc 15.00 0.00 2.00 2.00 1.00 1.00 2.00 3.00 - - - - - 2.00 - - - - - - - 1.00 - - 1.00 - - - - - - - - -
............................TGACTTCAGACTCATCCAGCAGGTtgca....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 tgca 12.00 0.00 6.00 - 1.00 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................ACTGGGAGCCTGACAGTACAGGGTGGC........................................................................................................................................................................................................................................... 27 1 11.00 11.00 - - - - - - - 11.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................TTGTAGTAAGGACTTGGATTAAGAGG........................................................................................................................................................................................................................................................................................................................ 26 1 9.00 9.00 2.00 2.00 - - - - 1.00 - 3.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................TAGTAAGGACTTGGATTAAGAGGAGG..................................................................................................................................................................................................................................................................................................................... 26 1 9.00 9.00 1.00 - 2.00 - 1.00 1.00 - - 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................GGATAGTAGTTAACTTGGTAGAGAGGAC......................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 6.00 6.00 1.00 3.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................TGACTTCAGACTCATCCAGCAGGTtg......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 tg 6.00 0.00 - 1.00 1.00 1.00 - 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................TAAGGACTTGGATTAAGAGGAGGAAG.................................................................................................................................................................................................................................................................................................................. 26 1 6.00 6.00 2.00 2.00 - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TAGTAGTTAACTTGGTAGAGAGGACCC....................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 5.00 5.00 1.00 - - 1.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................TGAATGATCAGGAGCCTGTAACTGGGA............................................................................................................................................................................................................................................................... 27 1 5.00 5.00 - 1.00 - - - - 1.00 - - - 2.00 - - - - - - - - - - - - - - - - 1.00 - - - -
................................................................................................................................................................................................................................................TAGTAAGGACTTGGATTAAGAGGAGGA.................................................................................................................................................................................................................................................................................................................... 27 1 5.00 5.00 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TGCTACTCTTTCGAGATTCTTCGGCCA.......................................................................................................................................................................................................................................................................................................................................................... 27 1 4.00 4.00 1.00 - 1.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................CAGCCATGACTTCAGACTCATCCAGCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 29 1 4.00 4.00 - - - - - - - 4.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTTGGGAAGCCCGGTAGTGGTA..................................................................................................... 26 1 4.00 4.00 - - - - - - - - - 1.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.......................AGCCATGACTTCAGACTCATCCAGCAGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 4.00 4.00 - 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................TGTAGTAAGGACTTGGATTAAGAGGA....................................................................................................................................................................................................................................................................................................................... 26 1 4.00 4.00 - 1.00 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TAGTAGTTAACTTGGTAGAGAGGACC........................................................................................................................................................................................................................................................................................................................................................................................................ 26 1 3.00 3.00 - - - - - - 1.00 - - - - - - - - - - - - - 1.00 - - - - 1.00 - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTAGTTTTGGTGAGGCCTCAGG........................................................................................................................................ 27 1 3.00 3.00 - 1.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................TGATGATTCAGGATAGTAGTTAACTTG.................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 3.00 3.00 - - - - - - - - 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................AAGGACTTGGATTAAGAGGAGGAAG.................................................................................................................................................................................................................................................................................................................. 25 1 3.00 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................AGCCATGACTTCAGACTCATCCAGCAGGTt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 30 t 3.00 4.00 - 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................TGGATTAAGAGGAGGAAGCTTGGCTA.......................................................................................................................................................................................................................................................................................................... 26 1 3.00 3.00 1.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAGTAGTGAGAGTGAGCTGGAT.............................................................................................................................................................. 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGTTGCACAGGAGATTTGGGTC............................. 27 1 2.00 2.00 - - - - - - - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................TGAATGATCAGGAGCCTGTAACTGGG................................................................................................................................................................................................................................................................ 26 1 2.00 2.00 - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TGCTAAATTCAGAGAAGGGGCTCAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 2.00 2.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................GAATGATCAGGAGCCTGTAACTGGG................................................................................................................................................................................................................................................................ 25 1 2.00 2.00 - - - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................TTGTAGTAAGGACTTGGATTAAGAGGA....................................................................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................GTATTGTAGTAAGGACTTGGATTAAG........................................................................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................TAAGGACTTGGATTAAGAGGAGGAAGC................................................................................................................................................................................................................................................................................................................. 27 1 2.00 2.00 - - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................TAACTGGGAGCCTGACAGTACAGGGT.............................................................................................................................................................................................................................................. 26 1 2.00 2.00 - - - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
............................TGACTTCAGACTCATCCAGCAGGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................TATTGTAGTAAGGACTTGGATTAAGAGG........................................................................................................................................................................................................................................................................................................................ 28 1 2.00 2.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................CCATGACTTCAGACTCATCCAGCAGGTt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 t 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTGGATGTAGTTTTGGTGAGGC.............................................................................................................................................. 26 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................TAGTAGTGAGAGTGAGCTGGATGTAGTT........................................................................................................................................................ 28 1 2.00 2.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.........................CCATGACTTCAGACTCATCCAGCAGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
...........................................................................................................................................................GATAGTAGTTAACTTGGTAGAGAGGACC........................................................................................................................................................................................................................................................................................................................................................................................................ 28 1 2.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................TGAATGATCAGGAGCCTGTAACTGGGAGC............................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..................................................GTGAGGTGTGGCCTGAGGCACAGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
................................................................................................................................................................TAGTTAACTTGGTAGAGAGGACCCAAAT................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................TAAGGACTTGGATTAAGAGGAGGAAGCT................................................................................................................................................................................................................................................................................................................ 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................................GATTCCAGAAGGCTCtgt.................................................................................................................................................................................................... 18 tgt 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................GATTCTTCGGCCAAGTAAGTATTGTAGT........................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TAGTAGTTAACTTGGTAGAGAGGACCCAA..................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................TACCTTAGAAGATTCCAGAAGGCTCC...................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................ACTTGGATTAAGAGGAGGAAGCTTGGC............................................................................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.TGAGGGTGGAATGATGCTAGTCAGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAGCTGGATGTAGTTTTGGTG.................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................ATAGTAGTTAACTTGGTAGAGAGGACCC....................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................GAGCCAGAGCCTGTctgt................................................................................................................................................................................. 18 ctgt 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................TTGTAGTAAGGACTTGGATTAAGAGGt....................................................................................................................................................................................................................................................................................................................... 27 t 1.00 9.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATGTAGTTTTGGTGAGGCCTC........................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................TAGTAAGGACTTGGATTAAGAGGAGGt.................................................................................................................................................................................................................................................................................................................... 27 t 1.00 9.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAGTGAGAGTGAGCTGGATGTA........................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................AACTTGGTAGAGAGGACCCAAATGAGGAAGGCG......................................................................................................................................................................................................................................................................................................................................................................................... 33 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAGTGAGCTGGATGTAGTTTTG..................................................................................................................................................... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................TGAGGCCTCTGAATGATCAGGA............................................................................................................................................................................................................................................................................. 22 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTTGCACAGGAGATTTGGGTC............................. 24 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................GAATGATCAGGAGCCTGTAACTGGGAGC............................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................AGGACTTGGATTAAGAGGAGGAAGCTTt.............................................................................................................................................................................................................................................................................................................. 28 t 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCTGTGAGAAACAct................ 18 ct 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................TAGTAGTGAGAGTGAGCTGGATGTAt.......................................................................................................................................................... 26 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................GAATGATCAGGAGCCTGTAACTGGGA............................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
......................................................................................................TGCTAAATTCAGAGAAGGGGCTCAGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................AGTAAGTATTGTAGTAAGGACTTGGA................................................................................................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGATTTGGGTCTGTGAGAAACAGACAA............. 31 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
............................TGACTTCAGACTCATCCAGCAGGTt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 t 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................TTGGATTAAGAGGAGGAAGCTTGGCTAC......................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................TGACAGTACAGGGTGGCACAGCAGGGT................................................................................................................................................................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................GCCATGACTTCAGACTCATCCAGCAGGTtg......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 30 tg 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TGCTAAATTCAGAGAAGGGGCTCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TCTTTCGAGATTCTTCGGCCAAGTAAG.................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............TGCTAGTCAGCCATGACTTCAGACTCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAGCCCGGTAGTGGTAGTGGGGg.............................................................................................. 27 g 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................TGAGGCACAGCTGTGGTACATAGAGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGATTTGGGTCTGTGAGAAAC................... 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCCTGTTTAGTAGTGAGAGTG...................................................................................................................................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATGTAGTTTTGGTGAGGC.............................................................................................................................................. 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
..............................................................................................................................................................................GAGAGGACCCAAATGAGGAAGGCGCTCT..................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................TCTGAATGATCAGGAGCCTGTAACTGG................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTAGTTTTGGTGAGGCCTCA.......................................................................................................................................... 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................AGGATAGTAGTTAACTTGGTAGAGAGG........................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................GGATAGTAGTTAACTTGGTAGAGAGGACC........................................................................................................................................................................................................................................................................................................................................................................................................ 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................TGTAACTGGGAGCCTGACAGTACAGGGT.............................................................................................................................................................................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................TAACTGGGAGCCTGACAGTACAGGGTG............................................................................................................................................................................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAACAGACAATCACCAAGTGGactg 29 actg 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................GCCATGACTTCAGACTCATCCAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................TCAGCCATGACTTCAGACTCATCCAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................TAACTGGGAGCCTGACAGTACAGGG............................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................TAACTGGGAGCCTGAgcc...................................................................................................................................................................................................................................................... 18 gcc 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................CATGACTTCAGACTCATCCAGCAGGTtgc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 29 tgc 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................GCCATGACTTCAGACTCATCCAGCAGGTt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29 t 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................CATGACTTCAGACTCATCCAGCAGGTtg......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 tg 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................TGACTTCAGACTCATCCAGCAGGTtgt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 27 tgt 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........GGAATGATGCTAGTCAGCCATGACTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............TGCTAGTCAGCCATGACTTCAGACTCATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................TGATGATTCAGGATAGTAGTTAACT...................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTCCAGCCTCTGCTTCCA................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................TAAGAGGAGGAAGCTTGGCTACAGGTC.................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................TGACTTCAGACTCATCCAGCAGGa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 24 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
........................GCCATGACTTCAGACTCATCCAGCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................AGGACTTGGATTAAGAGGAGGAAGCTT............................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................TGACTTCAGACTCATCCAGCAGGTGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCTTCCAGGTTGCACAGGAGATTT.................................. 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................TTGTAGTAAGGACTTGGATTAAGAG......................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................TGACTTCAGACTCATCCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 2 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATTTGGGTCTGTGAGAAACAGA................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGGGTCTGTGAGAAACAGA................ 24 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................TCTGAATGATCAGGAGCCTGTAACTG.................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................TCTGCTAAATTCAGAGAAGGGGCTCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................CAGACTCATCCAGCAGGTa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 a 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTTTTGGTGAGGCCTCAGGAG...................................................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................TTGGATTAAGAGGAGGAAGCTTGGCTA.......................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TGAGGAAGGCGCTCTTGCTACTCTTT.......................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAACAGACAATCACCAAGTGGCC 27 3 0.67 0.67 - - 0.33 - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................TCAGCCATGACTTCAGACTCATCCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 2 0.50 0.50 - - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................TCAGACTCATCCAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 17 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGACAATCACCAAGTGGC. 23 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.33

Antisense strand
TTGAGGGTGGAATGATGCTAGTCAGCCATGACTTCAGACTCATCCAGCAGGTGAGGTGTGGCCTGAGGCACAGCTGTGGTACATAGAGGGTCTAACGACATCTGCTAAATTCAGAGAAGGGGCTCAGGTCCACGTGGCCAGATCTGATGATTCAGGATAGTAGTTAACTTGGTAGAGAGGACCCAAATGAGGAAGGCGCTCTTGCTACTCTTTCGAGATTCTTCGGCCAAGTAAGTATTGTAGTAAGGACTTGGATTAAGAGGAGGAAGCTTGGCTACAGGTCATGAGGCCTCTGAATGATCAGGAGCCTGTAACTGGGAGCCTGACAGTACAGGGTGGCACAGCAGGGTCTACCTTAGAAGATTCCAGAAGGCTCCAAAGAGCCAGAGCCTGTTTAGTAGTGAGAGTGAGCTGGATGTAGTTTTGGTGAGGCCTCAGGAGAAGCCGCTACTTTTGGGAAGCCCGGTAGTGGTAGTGGGGAGGGTGCCACCGACTGGCCAGATCAAGTCCAGCCTCTGCTTCCAGGTTGCACAGGAGATTTGGGTCTGTGAGAAACAGACAATCACCAAGTGGCC
.........................................................................................................................................................................................................................................((..((.((((...((((((.....((..(((....)))..)).))))))...((((..((((....))))..))))...)))).))..))...........................................................................................................................................................................................................................................................
........................................................................................................................................................................................................................................233........................................................................................324.........................................................................................................................................................................................................................................................
 Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		SRR028731(GSM400968)
Mili-wt-associated. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes) 		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes) 		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
........................................................GCCTGAGGCACAGCTGtttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 tttt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...................................................................................................GCTAAATTCAGAgatc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 16 gatc 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATCAAGTCcatc.................................................................. 18 catc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -