| Gene: Slc25a40 | ID: uc008wki.1_intron_11_0_chr5_8453361_f.3p | SPECIES: mm9 |
|
|
|
(4) PIWI.ip |
(1) PIWI.mut |
(13) TESTES |
| AGTAACCCAACAGTCTGAAAGCCTCCCTGGAGTTCTGTACACAGGGGAACAGAAACCACAGTCCATAGGCCTCCCTGGAGAACATCTGCACACAGGGCAACAAGTTGACTGCTCCTCTGAAAACCAAAGAGTCTAAAGGCCTCACAGGAGATCTACTGCAGCCAGGGCAACGGATACTTAGCTCCTCTACCCCTCTTAAGACCCCACAGTTGGAAGGCCCCACGGAAGGAAGAAATACAGGAAAACACAA ........................................................................((((((.......(((((..(((..(((....))).)))(((((.(((...((............))..))).)))))......)))))))))))....(((........)))................................................................. ......................................................................71.................................................................................................................186.............................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475281(GSM475281) total RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................TGGAGAACATCTGCACACAGGGCAAC..................................................................................................................................................... | 26 | 1 | 7.00 | 7.00 | 3.00 | 1.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................................................................TGGAGAACATCTGCACACAGGGCAACA.................................................................................................................................................... | 27 | 1 | 5.00 | 5.00 | 1.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - |
| ...........................................................................TGGAGAACATCTGCACACAGGGCAACAAG.................................................................................................................................................. | 29 | 1 | 5.00 | 5.00 | - | 1.00 | 2.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - |
| .............................................................................GAGAACATCTGCACACAGGGCAACAAG.................................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................CCCTGGAGAACATCTGCACACAGGGCA....................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - |
| .............................................................................GAGAACATCTGCACACAGGGCAACAAGT................................................................................................................................................. | 28 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................GGAGAACATCTGCACACAGGGCAACAAGT................................................................................................................................................. | 29 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TCCCTGGAGAACATCTGCACACAGGGCA....................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................CCCTGGAGAACATCTGCACACAGGGC........................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...........................................................................TGGAGAACATCTGCACACAGGGCAACt.................................................................................................................................................... | 27 | t | 1.00 | 7.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................TGGAGAACATCTGCACACAGGGCAACAAGT................................................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .......................................................................TCCCTGGAGAACATCTGCACACAGGGCAAC..................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................TGCAGCCAGGGCAACGGATACTTAGC.................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..........................CTGGAGTTCTGTACACAGGGGAACAG...................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................AGGAGATCTACTGCAGCCAGGGCAccg.............................................................................. | 27 | ccg | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ............................................................................GGAGAACATCTGCACACAGGGCAACAAG.................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................TACTGCAGCCAGGGCAACGGATACTT....................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .................................................................TAGGCCTCCCTGGAGAACATCTGC................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ............................................................................................................................................................TGCAGCCAGGGCAACGGATACTTAGCT................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ....ACCCAACAGTCTGAAAGCCTCCCTG............................................................................................................................................................................................................................. | 25 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - |
| AGTAACCCAACAGTCTGAAAGCCTCCCTGGAGTTCTGTACACAGGGGAACAGAAACCACAGTCCATAGGCCTCCCTGGAGAACATCTGCACACAGGGCAACAAGTTGACTGCTCCTCTGAAAACCAAAGAGTCTAAAGGCCTCACAGGAGATCTACTGCAGCCAGGGCAACGGATACTTAGCTCCTCTACCCCTCTTAAGACCCCACAGTTGGAAGGCCCCACGGAAGGAAGAAATACAGGAAAACACAA ........................................................................((((((.......(((((..(((..(((....))).)))(((((.(((...((............))..))).)))))......)))))))))))....(((........)))................................................................. ......................................................................71.................................................................................................................186.............................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475281(GSM475281) total RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................................................................................ATACAGGAAAACACgg.. | 16 | gg | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| .....CCCAACAGTCTGAAAGCC................................................................................................................................................................................................................................... | 18 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 |