| Gene: Pank4 | ID: uc008wcl.1_intron_17_0_chr4_154353904_f.5p | SPECIES: mm9 |
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(3) OTHER.mut |
(1) PIWI.ip |
(1) PIWI.mut |
(13) TESTES |
| AGGCTGCTGCTGGTGCAGACCGGTTCCAGCTCTCCATGCCTAGACCTCAGGTAACCCAGCTTTTCTTCATCCTGCTCTGCAAGGCACCAAAACCAGCCATGCTGCTGCTTGCCCTAAATGTGACCTATGTGGCCACTTCTTCCTGTAGCCTGTAGGGCTGATGGGCAACTGACCCAGGCTCCCTGCTACAGGACAGACCTGTGGCAGGAAGCTGTCCCATTTTCCCACTTATTATTTACTCTGTGTGTGT ....................................................................................................((....))...........(((.((.....)).))).((((((((((((....((((....((((.......))))....))))))))))))).)))..................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | GSM475281(GSM475281) total RNA. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................AGGGCTGATGGGCAACTGACC............................................................................ | 21 | 1 | 27.00 | 27.00 | 11.00 | 4.00 | 6.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................TAGGGCTGATGGGCAACTGACC............................................................................ | 22 | 1 | 5.00 | 5.00 | 1.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .............TGCAGACCGGTTCCAGCTCTCCATGCC.................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................TTCCAGCTCTCCATGCCTAGA.............................................................................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................................................................................TAGGGCTGATGGGCAACTGACCC........................................................................... | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGGTGCAGACCGGTTCCAGCTCTCC....................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .........................................................................................................................................................AGGGCTGATGGGCAACTtacc............................................................................ | 21 | tacc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .............TGCAGACCGGTTCCAGCTCTCCATGCCTt................................................................................................................................................................................................................ | 29 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| AGGCTGCTGCTGGTGCAGACCGGTTCCAGCTCTCCATGCCTAGACCTCAGGTAACCCAGCTTTTCTTCATCCTGCTCTGCAAGGCACCAAAACCAGCCATGCTGCTGCTTGCCCTAAATGTGACCTATGTGGCCACTTCTTCCTGTAGCCTGTAGGGCTGATGGGCAACTGACCCAGGCTCCCTGCTACAGGACAGACCTGTGGCAGGAAGCTGTCCCATTTTCCCACTTATTATTTACTCTGTGTGTGT ....................................................................................................((....))...........(((.((.....)).))).((((((((((((....((((....((((.......))))....))))))))))))).)))..................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | GSM475281(GSM475281) total RNA. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................CAGCTTTTCTTCATCCTGCTCTGCA......................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................TCCCATTTTCCCACTTATTATTTACTC......... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - |
| ........................................................................................................................................................................................................................CCATTTTCCCACTTATTATTTACTCT........ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ................AGACCGGTTCCAGCTCTCCATGCCTA................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |