| Gene: Pik3cd | ID: uc008vws.1_intron_22_0_chr4_149048304_r.5p | SPECIES: mm9 |
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(2) OTHER.mut |
(4) PIWI.ip |
(2) PIWI.mut |
(17) TESTES |
| TCGCGCCTAGCCTTGGGGCTGCCAGCTCCGCCGACCCAGCTGCTGGACCGGTAAGTGCTCTCCACAGGATTTATCGCAGAAGTGTGGAGAAGACTGGATCGGAAGGTGGCGAGGAGGTTCGGGGCCGTTCTCCCACACGCTCCCAGCAGGCACAGCCAGTGCGCCTTGACTTTGGGCGCCTCCTGGCGTCTGGCAAGGGGACAGTGGATCCCTCCAAGCCAGTCTGCGGGGACCCAGGCCTGAGCTACCC .........................................................................................................((((.((((((((.....))).)))))))))...((((..((((((...(((((.((((((.......))))))...))))))))).))..)))).................................................. ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................TCGCAGAAGTGTGGAGAAGACTGGATC...................................................................................................................................................... | 27 | 1 | 10.00 | 10.00 | 1.00 | - | 1.00 | 3.00 | - | 1.00 | - | 1.00 | - | 2.00 | 1.00 | - | - | - | - | - | - |
| .........................................................................TCGCAGAAGTGTGGAGAAGACTGGA........................................................................................................................................................ | 25 | 1 | 6.00 | 6.00 | - | 1.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................................................................TCGCAGAAGTGTGGAGAAGACTGGAT....................................................................................................................................................... | 26 | 1 | 6.00 | 6.00 | 3.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ....................................................................................TGGAGAAGACTGGATCGGAAGGTGGC............................................................................................................................................ | 26 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - |
| .........................................................................TCGCAGAAGTGTGGAGAAGACTGGAa....................................................................................................................................................... | 26 | a | 2.00 | 6.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................ATCGCAGAAGTGTGGAGAAGACTGGATC...................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................TTATCGCAGAAGTGTGGAGAAGACTG.......................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ....................................................................................TGGAGAAGACTGGATCGGAAGGTG.............................................................................................................................................. | 24 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................ACTGGATCGGAAGGTGGCGA.......................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................TGCTGGACCGGTAAGTGCTCTCCACgg....................................................................................................................................................................................... | 27 | gg | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................GTGGAGAAGACTGGATCGGAA.................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....................................................................................TGGAGAAGACTGGATCGGAAGGTGG............................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................GAAGACTGGATCGGAAGGTGGCGA.......................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................GACTGGATCGGAAGGTGGCGAGGAG...................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................ATCGCAGAAGTGTGGAGAAGACTGGA........................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAAGTGCTCTCCACAGGATTTATCGCA............................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TATCGCAGAAGTGTGGAGAAGACTG.......................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................CGCAGAAGTGTGGAGAAGACTGGATC...................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................GACTGGATCGGAAGGTGGCGAGGAatt.................................................................................................................................... | 27 | att | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................GAGAAGACTGGATCGGAAGGTGGC............................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................CTGCTGGACCGGTAAGTGCTCTCCACgg....................................................................................................................................................................................... | 28 | gg | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................GAAGACTGGATCGGAAGGTGGC............................................................................................................................................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................CAGGATTTATCGCAGAAGTGTGGAG................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................GGATTTATCGCAGAAGTGTGGAGAA............................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................GGAAGGTGGCGAGGAcgtt................................................................................................................................... | 19 | cgtt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .............................................................................AGAAGTGTGGAGAAGACTG.......................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .................................................................................................ATCGGAAGGTGGCGAGGAGGTTCGGG............................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................TTTATCGCAGAAGTGTGGAGAAGACTG.......................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................AAGTGTGGAGAAGACTGGAT....................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................TGGAGAAGACTGGATCGGAAGGgggc............................................................................................................................................ | 26 | gggc | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................GAAGACTGGATCGGAAGGTGGCGAGG........................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................ATTTATCGCAGAAGTGTGGAGAAGACTGG......................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................GAAGTGTGGAGAAGACTGGAT....................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................TGGAGAAGACTGGATCGGAAGGggg............................................................................................................................................. | 25 | ggg | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TGGCGTCTGGCAAGGGGACAGTGGATa........................................ | 27 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TGGCGTCTGGCAAGGGGACAGTGGATC........................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................GACTGGATCGGAAGGTGGCGAGG........................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| TCGCGCCTAGCCTTGGGGCTGCCAGCTCCGCCGACCCAGCTGCTGGACCGGTAAGTGCTCTCCACAGGATTTATCGCAGAAGTGTGGAGAAGACTGGATCGGAAGGTGGCGAGGAGGTTCGGGGCCGTTCTCCCACACGCTCCCAGCAGGCACAGCCAGTGCGCCTTGACTTTGGGCGCCTCCTGGCGTCTGGCAAGGGGACAGTGGATCCCTCCAAGCCAGTCTGCGGGGACCCAGGCCTGAGCTACCC .........................................................................................................((((.((((((((.....))).)))))))))...((((..((((((...(((((.((((((.......))))))...))))))))).))..)))).................................................. ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................ACCGGTAAGTGCTCTCCACAGGATTTA................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................AGTGGATCCCTCCAAGCC.............................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ................................................CGGTAAGTGCTCTCCACAGGATTTA................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |