(8)
OTHER.mut
(3)
PIWI.ip
(25)
TESTES

Sense strand
ACAAGCTTTCCTGACAACAAGGTCAAGAAGTATTTTGTCACCTCTTTTGAGTAAGTGATGATTGCGGACGGGGCAGCCTGTGCTGAGGGCTCTACCAACTGGTAGGATAAGTGGGAGGGGGCCTCTGGGAGCTCAAGGAGTGTCCAGGAGCAGTCAACTTGGGTTTCAGGTGACAGGAGGTCACTGAACGTCACATCAGGAGCAAGAATCAGCAACACTTCATAATATCCCATGGGGCCAAATACTCCCTAGGGAAGAGCAAATCTAACTCCCCATTTCCCTCAGACAGACCCAAGGAGCTCCAGGCTGGGTATGTCCTGGAAGTCACCTGGGTCCCTTGAGCCACCTACCTGGCAAGGAAGGGCTCTGTTTAGCATGCTGGCAATACAAGCCTGACCTCTGCCCCCAGGATGTGCCTCAAATCCCAGATGGTGGACCTCAAAGCTGAGGGCTACTGCG
.............................................................................................................................................................................................................................................................................................................................((((........(((.((....)).))).......(((((((..(((((.(((...((......))...))))))))..))).)))).))))..................................................
.....................................................................................................................................................................................................................................................................................................................310................................................................................................409................................................
Size Perfect hit Total Norm Perfect Norm mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
.....................................................................................................GTAGGATAAGTGGGAGccc................................................................................................................................................................................................................................................................................................................................................... 19 ccc 25.00 6.00 1.00 22.00 - - 1.00 - - - - - - - - - - - - - - 1.00 - - - - -
.....................................................................................................GTAGGATAAGTGGGAGccct.................................................................................................................................................................................................................................................................................................................................................. 20 ccct 12.00 6.00 10.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGcct................................................................................................................................................................................................................................................................................................................................................... 19 cct 7.00 6.00 - - 7.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAG...................................................................................................................................................................................................................................................................................................................................................... 16 1 6.00 6.00 5.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGccgg.................................................................................................................................................................................................................................................................................................................................................. 20 ccgg 5.00 6.00 - - - 5.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGA....................................................................................................................................................................................................................................................................................................................................................... 15 2 4.00 4.00 2.50 - - 0.50 - - - - 1.00 - - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGc..................................................................................................................................................................................................................................................................................................................................................... 17 c 4.00 6.00 1.00 - - - 2.00 - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................TAGGATAAGTGGGAGccct.................................................................................................................................................................................................................................................................................................................................................. 19 ccct 3.67 1.00 2.67 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................TAGGATAAGTGGGAGcct................................................................................................................................................................................................................................................................................................................................................... 18 cct 3.67 1.00 - - 3.67 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TAGGATAAGTGGGAGG..................................................................................................................................................................................................................................................................................................................................................... 16 1 3.00 3.00 - 1.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGGc.................................................................................................................................................................................................................................................................................................................................................... 18 c 3.00 0.00 - 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................CTGGCAAGGAAGGGCTCTGT......................................................................................... 20 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................AGACCCAAGGAGCTCCAGG......................................................................................................................................................... 19 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGGccc.................................................................................................................................................................................................................................................................................................................................................. 20 ccc 2.00 0.00 - - - - - - - - - - - - - 2.00 - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................CCTGGCAAGGAAGGGCTCTGTTT....................................................................................... 23 1 2.00 2.00 - - - - - - - - - 1.00 - - - - - 1.00 - - - - - - - - -
...........TGACAACAAGGTCAAGAAGTATTTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - - - - - - - - - - 2.00 - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGcc.................................................................................................................................................................................................................................................................................................................................................... 18 cc 2.00 6.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................TTTGAGTAAGTGATttga............................................................................................................................................................................................................................................................................................................................................................................................................ 18 ttga 2.00 0.00 - - - - - - - - - - 1.00 - - - - - - 1.00 - - - - - - -
......................................................................................................TAGGATAAGTGGGAGcc.................................................................................................................................................................................................................................................................................................................................................... 17 cc 1.67 1.00 1.33 - 0.33 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................GAGGTCACTGAACGT............................................................................................................................................................................................................................................................................ 15 2 1.50 1.50 1.50 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TAGGATAAGTGGGAGccc................................................................................................................................................................................................................................................................................................................................................... 18 ccc 1.33 1.00 1.00 - - - 0.33 - - - - - - - - - - - - - - - - - - - -
.............................................TTTGAGTAAGTGATGATTGCGGACG..................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................................GTAAGTGATGATTGCGGACGGGGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGGcc................................................................................................................................................................................................................................................................................................................................................... 19 cc 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATGGTGGACCTCAAAG............... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..............................................................................TGTGCTGAGGGCTCTACCAACTGGTAGG................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................TAGGATAAGTGGGAGccga.................................................................................................................................................................................................................................................................................................................................................. 19 ccga 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................TCAAGGAGTGTCCAGGAGC.................................................................................................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
............................................................................................TACCAACTGGTAGGATAAGTGGGAG...................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TAGGATAAGTGGGAG...................................................................................................................................................................................................................................................................................................................................................... 15 3 1.00 1.00 0.33 - - - - - - - 0.33 - - - - - - - - - - 0.33 - - - - -
.............................................................................................................................................GTCCAGGAGCAGTCAACatga......................................................................................................................................................................................................................................................................................................... 21 atga 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
......................................................................................................TAGGATAAGTGGGAGcctc.................................................................................................................................................................................................................................................................................................................................................. 19 cctc 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................GGAGGTCACTGAACGT............................................................................................................................................................................................................................................................................ 16 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGcctc.................................................................................................................................................................................................................................................................................................................................................. 20 cctc 1.00 6.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGccg................................................................................................................................................................................................................................................................................................................................................... 19 ccg 1.00 6.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................GGATAAGTGGGAGGcccc................................................................................................................................................................................................................................................................................................................................................. 18 cccc 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................TGAACGTCACATCAGGAGCAAGAATCAGC...................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................................................TAAGTGATGATTGCGGACGGGGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................TGAACGTCACATCAGGAGCAAGAATC......................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................ATTTTGTCACCTCTcaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................... 18 caaa 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
............................................................................................................................................................................................................................................................................................GACAGACCCAAGGAGCTCCAGGC........................................................................................................................................................ 23 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGctc................................................................................................................................................................................................................................................................................................................................................... 19 ctc 1.00 6.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGccga.................................................................................................................................................................................................................................................................................................................................................. 20 ccga 1.00 6.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAGcttc.................................................................................................................................................................................................................................................................................................................................................. 20 cttc 1.00 6.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................ACCTGGCAAGGAAGGGCTCTGTTTAG..................................................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................GTAGGATAAGTGGGAaccc................................................................................................................................................................................................................................................................................................................................................... 19 accc 0.50 4.00 - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TAGGATAAGTGGGAGct.................................................................................................................................................................................................................................................................................................................................................... 17 ct 0.33 1.00 - - - - - 0.33 - - - - - - - - - - - - - - - - - - -
......................................................................................................TAGGATAAGTGGGAGctc................................................................................................................................................................................................................................................................................................................................................... 18 ctc 0.33 1.00 - - - - - 0.33 - - - - - - - - - - - - - - - - - - -
......................................................................................................TAGGATAAGTGGGAGccgg.................................................................................................................................................................................................................................................................................................................................................. 19 ccgg 0.33 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 0.33

Antisense strand
ACAAGCTTTCCTGACAACAAGGTCAAGAAGTATTTTGTCACCTCTTTTGAGTAAGTGATGATTGCGGACGGGGCAGCCTGTGCTGAGGGCTCTACCAACTGGTAGGATAAGTGGGAGGGGGCCTCTGGGAGCTCAAGGAGTGTCCAGGAGCAGTCAACTTGGGTTTCAGGTGACAGGAGGTCACTGAACGTCACATCAGGAGCAAGAATCAGCAACACTTCATAATATCCCATGGGGCCAAATACTCCCTAGGGAAGAGCAAATCTAACTCCCCATTTCCCTCAGACAGACCCAAGGAGCTCCAGGCTGGGTATGTCCTGGAAGTCACCTGGGTCCCTTGAGCCACCTACCTGGCAAGGAAGGGCTCTGTTTAGCATGCTGGCAATACAAGCCTGACCTCTGCCCCCAGGATGTGCCTCAAATCCCAGATGGTGGACCTCAAAGCTGAGGGCTACTGCG
.............................................................................................................................................................................................................................................................................................................................((((........(((.((....)).))).......(((((((..(((((.(((...((......))...))))))))..))).)))).))))..................................................
.....................................................................................................................................................................................................................................................................................................................310................................................................................................409................................................
Size Perfect hit Total Norm Perfect Norm mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
.....................................................................................................................GGGGCCTCTGGGAGCTCAAGGAGTGTCCA......................................................................................................................................................................................................................................................................................................................... 29 1 4.00 4.00 - - - - - - 3.00 1.00 - - - - - - - - - - - - - - - - -
......................................................................................................................GGGCCTCTGGGAGCTCAAGGAGTGTCCA......................................................................................................................................................................................................................................................................................................................... 28 1 3.00 3.00 - - - - - - - 1.00 - - - - 1.00 - - - - - - - - - - 1.00 -
.................................................................................AGGGCTCTACCAACTggat....................................................................................................................................................................................................................................................................................................................................................................... 19 ggat 2.00 0.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - -
......................................................................GGGCAGCCTGTGCTGAGGGCTCTACCA.......................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGCCTCAAATCCCAGATGGTGGa........................ 27 a 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCCAGGATGTGCCTCAAATCCCA................................ 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..................................................................GGGCAGCCTGTGCTGAGGGCTCTACCAtgtc.......................................................................................................................................................................................................................................................................................................................................................................... 31 tgtc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.........................................................................................................................................................................................................................................................................................................................................................................GGGCTCTGTTTAGCATGCTGGCAATACAA..................................................................... 29 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................GCAGCCTGTGCTGAGGGCTCTACCAACT....................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.....................................................................GGGGCAGCCTGTGCTGAGGGCTCTACCAA......................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.......................................................................GGCAGCCTGTGCTGAGGGCTCTACCA.......................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................GGGGCAGCCTGTGCTGAGGGCTCTACCA.......................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAAATCCCAGATGGTGGACCTCAAA................ 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
............................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCAAATCCCAGATGGTGGACCTCAAAa................ 31 a 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................CTGGCAAGGAAGGGCTCT........................................................................................... 18 2 0.50 0.50 - - - - - - - - - - - - - - - - - - 0.50 - - - - - -