(4)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(28)
TESTES

Sense strand
CACAGAGAAGAATGTGATTGCGGCGTTAAATTCTCGGACTGGAGAGATCTGTGAGTGAACTGCGGAGACCAGAGGCTTCTGGGAAGGAAGCTGACTGGGTGCATCTGAGCGACCCGTGGCTTGCCTTCTTTTTATGTTCTCTAGTCTTGTTGTCTTTCACTGGGTAAATTTGTCGCACTGCCTTTGTAATTCCTTCCCTCTGTCCTGAAGGCCTTTAAGATAGCACTGCAAGCCGGGCGTGGTGGCACAC


Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT3()
Testes Data. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
............TGTGATTGCGGCGTTAAATTCTCGGA.................................................................................................................................................................................................................... 26 1 27.00 27.00 7.00 5.00 6.00 - 2.00 1.00 - 1.00 - 1.00 2.00 - - - 1.00 - 1.00 - - - - - - - - - - -
............TGTGATTGCGGCGTTAAATTCTCGGAC................................................................................................................................................................................................................... 27 1 15.00 15.00 1.00 4.00 - 2.00 2.00 - - 3.00 - 2.00 - - - - - - - - - - - - - - - 1.00 - -
............TGTGATTGCGGCGTTAAATTCTCGGACT.................................................................................................................................................................................................................. 28 1 15.00 15.00 4.00 8.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............TGATTGCGGCGTTAAATTCTCGGACT.................................................................................................................................................................................................................. 26 1 12.00 12.00 3.00 2.00 - - 2.00 1.00 - 2.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - -
................ATTGCGGCGTTAAATTCTCGGACTGG................................................................................................................................................................................................................ 26 1 11.00 11.00 2.00 3.00 - - 1.00 1.00 - - - - - 1.00 - 1.00 - - - - - - 1.00 - - 1.00 - - - -
.................................................TGTGAGTGAACTGCGGAGACCAGAGG............................................................................................................................................................................... 26 1 9.00 9.00 - 1.00 1.00 - - - 6.00 - - - - - - - - - - 1.00 - - - - - - - - - -
............................AATTCTCGGACTGGAGAGATCTtgtg.................................................................................................................................................................................................... 26 tgtg 7.00 0.00 - - 3.00 3.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
............TGTGATTGCGGCGTTAAATTCTCGG..................................................................................................................................................................................................................... 25 1 6.00 6.00 2.00 - - 1.00 - 1.00 - - 1.00 - - - - - - - - 1.00 - - - - - - - - - -
................ATTGCGGCGTTAAATTCTCGGACTGGAG.............................................................................................................................................................................................................. 28 1 6.00 6.00 3.00 - - - 1.00 - - - - - - 2.00 - - - - - - - - - - - - - - - -
................ATTGCGGCGTTAAATTCTCGGACTGGA............................................................................................................................................................................................................... 27 1 5.00 5.00 1.00 3.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................TGAGTGAACTGCGGAGACCAGAGG............................................................................................................................................................................... 24 1 4.00 4.00 - - - - - - 4.00 - - - - - - - - - - - - - - - - - - - - -
..................................................GTGAGTGAACTGCGGAGACCAGAGG............................................................................................................................................................................... 25 1 3.00 3.00 - - - 1.00 - 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - -
.......AAGAATGTGATTGCGGCGTTAAATTCT........................................................................................................................................................................................................................ 27 1 3.00 3.00 1.00 - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
.................TTGCGGCGTTAAATTCTCGGACTGGAG.............................................................................................................................................................................................................. 27 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..........AATGTGATTGCGGCGTTAAATTCTCGG..................................................................................................................................................................................................................... 27 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......AAGAATGTGATTGCGGCGTTAAATTCTC....................................................................................................................................................................................................................... 28 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................ATTGCGGCGTTAAATTCTCGGACTGGAGA............................................................................................................................................................................................................. 29 1 2.00 2.00 - - - - - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - -
....GAGAAGAATGTGATTGCGGCGTTAA............................................................................................................................................................................................................................. 25 1 2.00 2.00 - - - - - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - -
........AGAATGTGATTGCGGCGTTAAATTCT........................................................................................................................................................................................................................ 26 1 2.00 2.00 - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................AAATTCTCGGACTGGAGAGATCTtgt..................................................................................................................................................................................................... 26 tgt 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.......................CGTTAAATTCTCGGA.................................................................................................................................................................................................................... 15 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................TGCGGCGTTAAATTCTCGGACTGGAGA............................................................................................................................................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................AGATCTGTGAGTGAACTGCGGAGACC.................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................ATTGCGGCGTTAAATTCTCGGACT.................................................................................................................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
....................CGGCGTTAAATTCTCGGACTGGAGAGA........................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............TGATTGCGGCGTTAAATTCTCGGAC................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........AGAATGTGATTGCGGCGTTAAATTCTC....................................................................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................GAGAGATCTGTGAGTGAACTGCGGAGA...................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................ATTCTCGGACTGGAGAGATCTtgtg.................................................................................................................................................................................................... 25 tgtg 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................TAGCACTGCAAGCCGGGCGTGGcgg..... 25 cgg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................AATTCTCGGACTGGAGA............................................................................................................................................................................................................. 17 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................TCTGGGAAGGAAGCTGACTGGa....................................................................................................................................................... 22 a 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
................ATTGCGGCGTTAAATTCTCGGAC................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
............TGTGATTGCGGCGTTAAATTCTCGGACTG................................................................................................................................................................................................................. 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................GGCGTTAAATTCTCGGACTGGAGAGA........................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............TGTGATTGCGGCGTTAAATTCTagg..................................................................................................................................................................................................................... 25 agg 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................TGCGGCGTTAAATTCTCGGACTGGAGAG............................................................................................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................GCGGCGTTAAATTCTCGGACTGGAGAGATC......................................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.............................................................................TCTGGGAAGGAAGCTGACTGGGT...................................................................................................................................................... 23 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............GTGATTGCGGCGTTAAATTCTCGGACTGG................................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
............TGTGATTGCGGCGTTAAATTCTCGGACTGG................................................................................................................................................................................................................ 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.................TTGCGGCGTTAAATTCTCGGACTGGAGA............................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
......GAAGAATGTGATTGCGGCGTTAAATTC......................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAAGATAGCACTGCAAGCCGGGCGTGGT....... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................TTGCGGCGTTAAATTCTCGGACTGGAGAG............................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..............TGATTGCGGCGTTAAATTCTCGGACTGGAG.............................................................................................................................................................................................................. 30 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................TTAAATTCTCGGACTGGAGAG............................................................................................................................................................................................................ 21 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TCCCTCTGTCCTGAAGGCCTTTAAGATA............................ 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
....................................................................................................................................................GTTGTCTTTCACTGGGTAAATTTGTCGC.......................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
................ATTGCGGCGTTAAATTCTCGGACTGGAGt............................................................................................................................................................................................................. 29 t 1.00 6.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.................TTGCGGCGTTAAATTCTCGGACTGG................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..................................................GTGAGTGAACTGCGGAGACCAGAGGC.............................................................................................................................................................................. 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
................ATTGCGGCGTTAAATTCTCGGACTGGAGAGt........................................................................................................................................................................................................... 31 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....GAGAAGAATGTGATTGCGGCGTTAAAT........................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
......GAAGAATGTGATTGCGGCGTTAAAT........................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......GAAGAATGTGATTGCGGCGTTAAATTCTC....................................................................................................................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................TGAGTGAACTGCGGAGACCAGAGGC.............................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.........................................GAGAGATCTGTGAGTGAACTG............................................................................................................................................................................................ 21 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.....................................................................................GGAAGCTGACTGGGTGCATCTGAGCGAC......................................................................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................GTGAGTGAACTGCGG......................................................................................................................................................................................... 15 2 0.50 0.50 - - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - -
..............................TTCTCGGACTGGAGAGA........................................................................................................................................................................................................... 17 2 0.50 0.50 - - - - - - - - - - - - 0.50 - - - - - - - - - - - - - - -

Antisense strand
CACAGAGAAGAATGTGATTGCGGCGTTAAATTCTCGGACTGGAGAGATCTGTGAGTGAACTGCGGAGACCAGAGGCTTCTGGGAAGGAAGCTGACTGGGTGCATCTGAGCGACCCGTGGCTTGCCTTCTTTTTATGTTCTCTAGTCTTGTTGTCTTTCACTGGGTAAATTTGTCGCACTGCCTTTGTAATTCCTTCCCTCTGTCCTGAAGGCCTTTAAGATAGCACTGCAAGCCGGGCGTGGTGGCACAC


Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT3()
Testes Data. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
............................CTCGGACTGGAGAgatc............................................................................................................................................................................................................. 17 gatc 2.00 0.00 - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
....................................................................................AGCTGACTGGGTGCcctt.................................................................................................................................................... 18 cctt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.............................TCGGACTGGAGAGcgat............................................................................................................................................................................................................ 17 cgat 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -