| Gene: Hspg2 | ID: uc008vjf.1_intron_34_0_chr4_137124761_f | SPECIES: mm9 |
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(5) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(3) PIWI.mut |
(23) TESTES |
| TCAGAAGATCCCATCAATGACGGCGAGTGGCATCGGATAACAGCGCTGCGGTAAGGAGTCCAGCCAAGCGCTAGGGGGAGGGACCAGAGTTGGGCATAGGATCCAGGAGCACATACCTCCCCACCCCAGGCTTGGGGCAAGCTCTGAGATCTGAGGGGCAGAATAAGTAACTGATATGGAAAGACTCCTTACTGGCAAGCAGCGCTCCTCCAGTATCAAGGTGGTGGTGCACACTTGTGATCCCAGCACTTGGGAGGTGGAGGCAAGAAGATTCTGAGTTCGAACCCAGCCTGGGTTTCTTAAAGAGGGGAGAGCTGAGGACAGGCCTCAGAAGGTGGCTGTGTGTGGCCAGTAGGAAAGCAGAGAACTGAGAGCAAACACGGGCCAGATGTGCCTATTGGGAGTGTCAATGACAGGGGAGGATGGGGATTCAGGGCAAAGGACCTGACCCTGTCACACCTGCAGAGAGGGCCAGAGAGGCTCCATCCAAGTAGACGGTGAGGATCTGGTCACCG ................................................................................................................................................................................................................................................((((((...)))))).(((...((........(((.(((((..((((.....))))((((((............((((((.....))))))..(((.((.....)).)))..))))))......))))).)))))...)))..(((....((.((((((.....((((...))))......)))))).))....))).............................................................................. ............................................................................................................................................................................................................................................237.......................................................................................................................................................................................................439.......................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT1() Testes Data. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................................................................................................................AAGAAGATTCTGAGTTCGAACCCAGCCTG.............................................................................................................................................................................................................................. | 29 | 1 | 3.00 | 3.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................CGGATAACAGCGCTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 17 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGGGGAGGATGGGGATTCAGG................................................................................ | 25 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCTGTCACACCTGCAGA................................................. | 21 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .........................................................................................................................................................................................................................................................................................................................................................TGGCCAGTAGGAAAGCAGAGA..................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................TGACGGCGAGTGGCATCGGATAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................ATCGGATAACAGCGCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGTAGACGGTGAGGATCTGGTC.... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................CCCAGCACTTGGGAGGTGGcgg............................................................................................................................................................................................................................................................ | 22 | cgg | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGGATCTGGTaaat. | 18 | aaat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTAGACGGTGAGGATCTGGTC.... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ........................................................................................................................................................................................................................................................CTTGGGAGGTGGAGGCAAGAAGATTgt................................................................................................................................................................................................................................................ | 27 | gt | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCAGGaaa............................................................................. | 26 | aaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACGGTGAGGATCTGGTCAC.. | 22 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGTAGACGGTGAGGATCTGG...... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCAG................................................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGTAGACGGTGAGGATCTGGT..... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AGGGGCAGAATAAGTggg........................................................................................................................................................................................................................................................................................................................................................ | 18 | ggg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................CAGAGAACTGAGAGCAAACACGGGCCA................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................CGGCGAGTGGCATCGGATAACAGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGACGGTGAGGATCTGGTCAC.. | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCAAGTAGACGGTGAGGATCTGt...... | 28 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGGAGGATGGGGATTCAGaa............................................................................... | 24 | aa | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGATTCAGGGCAAAGGAC....................................................................... | 21 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTAGACGGTGAGGATCTGGTCAC.. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TCAGAAGATCCCATCAATGACGGCGAGTGGCATCGGATAACAGCGCTGCGGTAAGGAGTCCAGCCAAGCGCTAGGGGGAGGGACCAGAGTTGGGCATAGGATCCAGGAGCACATACCTCCCCACCCCAGGCTTGGGGCAAGCTCTGAGATCTGAGGGGCAGAATAAGTAACTGATATGGAAAGACTCCTTACTGGCAAGCAGCGCTCCTCCAGTATCAAGGTGGTGGTGCACACTTGTGATCCCAGCACTTGGGAGGTGGAGGCAAGAAGATTCTGAGTTCGAACCCAGCCTGGGTTTCTTAAAGAGGGGAGAGCTGAGGACAGGCCTCAGAAGGTGGCTGTGTGTGGCCAGTAGGAAAGCAGAGAACTGAGAGCAAACACGGGCCAGATGTGCCTATTGGGAGTGTCAATGACAGGGGAGGATGGGGATTCAGGGCAAAGGACCTGACCCTGTCACACCTGCAGAGAGGGCCAGAGAGGCTCCATCCAAGTAGACGGTGAGGATCTGGTCACCG ................................................................................................................................................................................................................................................((((((...)))))).(((...((........(((.(((((..((((.....))))((((((............((((((.....))))))..(((.((.....)).)))..))))))......))))).)))))...)))..(((....((.((((((.....((((...))))......)))))).))....))).............................................................................. ............................................................................................................................................................................................................................................237.......................................................................................................................................................................................................439.......................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT1() Testes Data. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCATCCAAGTAga...................... | 16 | ga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................GAGGTGGAGGCAAGAAGATTCTGAGTT........................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................CTCCTCCAGTATCAAGaact....................................................................................................................................................................................................................................................................................................... | 20 | aact | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................CTCCTCCAGTATCAAGaaat....................................................................................................................................................................................................................................................................................................... | 20 | aaat | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................GGGCAAGCTCTGAGATCTGAGGGGCAGA................................................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................GTGATCCCAGCACTgcct......................................................................................................................................................................................................................................................................... | 18 | gcct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGGATGGGGATccca..................................................................................... | 19 | ccca | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................AGTTCGAACCCAGCCT............................................................................................................................................................................................................................... | 16 | 11 | 0.09 | 0.09 | - | - | - | - | - | - | - | 0.09 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |