| Gene: Rcan3 | ID: uc008vgm.1_intron_1_0_chr4_134974467_r.3p | SPECIES: mm9 |
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(5) OTHER.mut |
(1) OVARY |
(6) PIWI.ip |
(1) PIWI.mut |
(1) TDRD1.ip |
(26) TESTES |
| AACAATTACCATAAAGTTGGAAATGAAAGCCCTGTGGTGATGGTGCAGGCCTTTAATCTAAGAACTGGAGGCAGAGACCGTGAGATCTGTGAGTCAGGCCTACAGAGTGAGTTCCAGGACAGCCAGGGATACACGGAGAAACCCTGTCTCAGAAAAAGAAAAGAAAGGACAGCTGCTCACAAGCACGCCTTTCCCTGCAGGTGCAGGTGTCCGGGGAGGCCCGGGACAAGTCCTACTTACTGCCACCACA ................................................................(((.((((...(((((.........)).)))..)))).))).....(((((.((....)).)))))........................................................................................................................ ..................................................51...............................................................................132.................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT4() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................TCTAAGAACTGGAGGCAGAGACCGTG........................................................................................................................................................................ | 26 | 1 | 13.00 | 13.00 | 5.00 | - | 7.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TAATCTAAGAACTGGAGGCAGAGACCG.......................................................................................................................................................................... | 27 | 1 | 13.00 | 13.00 | 1.00 | 6.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - |
| .....................................................TAATCTAAGAACTGGAGGCAGAGACC........................................................................................................................................................................... | 26 | 1 | 12.00 | 12.00 | 1.00 | 7.00 | 1.00 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TAATCTAAGAACTGGAGGCAGAGACCGT......................................................................................................................................................................... | 28 | 1 | 9.00 | 9.00 | 3.00 | - | 1.00 | 1.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TTTAATCTAAGAACTGGAGGCAGAGAC............................................................................................................................................................................ | 27 | 1 | 6.00 | 6.00 | 1.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...................................................TTTAATCTAAGAACTGGAGGCAGAGA............................................................................................................................................................................. | 26 | 1 | 6.00 | 6.00 | - | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................TAAGAACTGGAGGCAGAGACCGTG........................................................................................................................................................................ | 24 | 1 | 3.00 | 3.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................TTAATCTAAGAACTGGAGGCAGAGACC........................................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | 1.00 | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................TAAGAACTGGAGGCAGAGACCGTGA....................................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TAATCTAAGAACTGGAGGCAGAGAC............................................................................................................................................................................ | 25 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................TCTAAGAACTGGAGGCAGAGACCGT......................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................ATCTAAGAACTGGAGGCAGAGACCGTG........................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........................................................TAAGAACTGGAGGCAGAGACCGT......................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................CAAGTCCTACTTACTGCCACCACA | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................TAAGAACTGGAGGCAGAGACCGTGAGATC................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TTTAATCTAAGAACTGGAGGCAGAG.............................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................TCTAAGAACTGGAGGCAGAGACCGTGA....................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...........................................................................................................TGAGTTCCAGGACAGCCAGGGATAata.................................................................................................................... | 27 | ata | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........................................................TAAGAACTGGAGGCAGAGACCG.......................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........TAAAGTTGGAAATGAAAGCCCTGTGG..................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........TAAAGTTGGAAATGAAAGCCCTGTGGTG................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................TAAGAACTGGAGGCAGAGACCGTGAGA..................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ........................................................TCTAAGAACTGGAGGCAGAGACCGTGt....................................................................................................................................................................... | 27 | t | 1.00 | 13.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TAATCTAAGAACTGGAGGCAGAGACCGTG........................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TAATCTAAGAACTGGAGGCAGAGACCGa......................................................................................................................................................................... | 28 | a | 1.00 | 13.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TAATCTAAGAACTGGAGGCAGA............................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................GAGTTCCAGGACAGCCAGGGATACAaat.................................................................................................................. | 28 | aat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................CCTTTAATCTAAGAACTGGAGGCAGAGA............................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................TCTCAGAAAAAGAAAAGAAAGGACAGC............................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................TGAGTTCCAGGACAGCCAGGGATAattt................................................................................................................... | 28 | attt | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TCAGAAAAAGAAAAGAAAGGACAGCTG........................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................TGGAAATGAAAGCCCTGTGGTGATGG............................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TACCATAAAGTTGGAAATGAAAGCCCT......................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................................................................CAGGACAGCCAGGGATtttt.................................................................................................................... | 20 | tttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ................................................................................................................................................................................................................................GACAAGTCCTACTTACTGCCACCACAaa | 28 | aa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................GAACTGGAGGCAGAGACCGTGAGATC................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TGAAAGCCCTGTGGTGATGGTGCAG.......................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................TCTAAGAACTGGAGGCAGAGACCGTGta...................................................................................................................................................................... | 28 | ta | 1.00 | 13.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................TAAGAACTGGAGGCAGAGACagtg........................................................................................................................................................................ | 24 | agtg | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................CCTACAGAGTGAGTTCCAGGACAGCCAta........................................................................................................................... | 29 | ta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....................................................TTAATCTAAGAACTGGAGGCAGAGAC............................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TAATCTAAGAACTGGAGGCAGAGA............................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................TTCCAGGACAGCCAGGGATACACGGAGA............................................................................................................... | 28 | 5 | 0.20 | 0.20 | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................TTCCAGGACAGCCAGGGATACACGGAG................................................................................................................ | 27 | 5 | 0.20 | 0.20 | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................GAGTTCCAGGACAGCCAGGGATACACGGA................................................................................................................. | 29 | 6 | 0.17 | 0.17 | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................CCAGGACAGCCAGGGATACACGGA................................................................................................................. | 24 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AACAATTACCATAAAGTTGGAAATGAAAGCCCTGTGGTGATGGTGCAGGCCTTTAATCTAAGAACTGGAGGCAGAGACCGTGAGATCTGTGAGTCAGGCCTACAGAGTGAGTTCCAGGACAGCCAGGGATACACGGAGAAACCCTGTCTCAGAAAAAGAAAAGAAAGGACAGCTGCTCACAAGCACGCCTTTCCCTGCAGGTGCAGGTGTCCGGGGAGGCCCGGGACAAGTCCTACTTACTGCCACCACA ................................................................(((.((((...(((((.........)).)))..)))).))).....(((((.((....)).)))))........................................................................................................................ ..................................................51...............................................................................132.................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT4() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................GGCCTTTAATCTAAgagt............................................................................................................................................................................................. | 18 | gagt | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................GAGGCCCGGGACAAGTCttgc.................. | 21 | ttgc | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................AGGCCTACAGAGTGAGTTCCAGGACAtt................................................................................................................................. | 28 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................ACAGCCAGGGATACaaga...................................................................................................................... | 18 | aaga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................CCTACAGAGTGAGTTCCAGGACAGaa................................................................................................................................ | 26 | aa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................GATGGTGCAGGCCTTTAATCTAAGA........................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................CAGGACAGCCAGGGATACACGGAGA............................................................................................................... | 25 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................AGGGATACACGGAGAAACCCTGT....................................................................................................... | 23 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................ACAGCCAGGGATACACGGAGAAA............................................................................................................. | 23 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................GTTCCAGGACAGCCAGGGATACACGG.................................................................................................................. | 26 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................AGGCCTACAGAGTGAGTTCCA...................................................................................................................................... | 21 | 18 | 0.06 | 0.06 | - | - | - | - | - | - | - | - | - | 0.06 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |