chr4:134088114 134088591 -
(5)
OTHER.mut 		(6)
PIWI.ip 		(3)
PIWI.mut 		(27)
TESTES

Sense strand
TCCTTCAGGTACAGGAGCTGGCTGAAACATCAGGAATGGAAGCCAATGTGGTAAGGAGGCCCAAGCTGGGGGCTAGAGAGCCGAGTACTGTACTGGCTTAAGAATGATATGAGTCCCTGAGACACCAGTTCATGTTTGCTTTTCCCTGAAGCCCTGCCATTTGAGCAAGGCTGGGTCCTACTTTCTATTTTTTTTTTTTTTTTTTTTGTACAGAGAAACATGAGGGAGCCAGAACAGCCATACCACCTGCTAATTCTAGTTCCTTCTCTAGACCCTCCCAACCATTGGCATATGTTAGCAGCAGCAGCTGTAGAGACTGAGACTGGCCCTAACAATTGGCTTGACTCACCTCCAGGAAGAGAAAGGCAGGCAGGGAACAGTAGTTGGACTCACTCTGAGGTTTGGGGTTGTCTGTCTGTCTTCTCTAGACTATCCCAATCTGGCAAAACAAGCCACATGGGGCTGCTCGAAGTGTGGT


 Size Perfect hit Total Norm Perfect Norm SRR363964(GSM822766)
AdultGlobal 5'-RACEread_length: 105. (testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR037901(GSM510437)
testes_rep2. (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		GSM475279(GSM475279)
Miwi-IP. (miwi testes) 		SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
....................................................................................................................................................................................................................................................................................................................................................TTGACTCACCTCCAGGAAGAGAAAGGCAGGCAGGGAACAGTAGTTGGACTCA...................................................................................... 52 1 46.00 46.00 46.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........TACAGGAGCTGGCTGAAACATCAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 21.00 21.00 - 7.00 3.00 4.00 1.00 2.00 - 2.00 1.00 - - 1.00 - - - - - - - - - - - - - - -
.........TACAGGAGCTGGCTGAAACATCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 10.00 10.00 - 2.00 2.00 3.00 1.00 - - - - - - 1.00 - - - - - 1.00 - - - - - - - - -
...TTCAGGTACAGGAGCTGGCTGAAACATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 7.00 7.00 - 3.00 2.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTGTCTGTCTTCTCTAGA................................................. 22 1 4.00 4.00 - - - - - - - - - - - - 2.00 1.00 - - - - - - - - - 1.00 - - -
.........TACAGGAGCTGGCTGAAACATCAGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 3.00 3.00 - 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............AGCTGGCTGAAACATCAGGAATGGAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 3.00 3.00 - - - - - - - - - 3.00 - - - - - - - - - - - - - - - - -
...TTCAGGTACAGGAGCTGGCTGAAACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 27 1 3.00 3.00 - 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........CAGGAGCTGGCTGAAACATCAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 3.00 3.00 - - - 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCAAAACAAGCCACATGGGGCTGCT........... 29 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........ACAGGAGCTGGCTGAAACATCAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00
.....CAGGTACAGGAGCTGGCTGAAACATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....TCAGGTACAGGAGCTGGCTGAAACATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 - - - 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
.........TACAGGAGCTGGCTGAAACATCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 25 1 2.00 2.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......AGGTACAGGAGCTGGCTGAAACATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................TGAAACATCAGGAATGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............AGCTGGCTGAAACATCAGGAATGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAAAACAAGCCACATGGGGCTGCTCGtt....... 31 tt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.....CAGGTACAGGAGCTGGCTGAAACATCAGt............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 29 t 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............GGAGCTGGCTGAAACATCAGGAATGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGCAAAACAAGCCACATGGGGCTGC............ 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAATCTGGCAAAACAAGCCACATGG.................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................AGAGAAAGGCAGGCAGGGAACAGTAGTT............................................................................................. 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............AGGAGCTGGCTGAAACATCAGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................TTGGCTTGACTCACCTCCAGGAAGAGAAA.................................................................................................................. 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................GCTGTAGAGACTGAGACTGGCCCTAACAATTGG........................................................................................................................................... 33 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..............GAGCTGGCTGAAACATCAGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTGTCTGTCTTCTCTAt.................................................. 21 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTGTCTGTCTTCTCTcg.................................................. 21 cg 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
....TCAGGTACAGGAGCTGGCTGAAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........ACAGGAGCTGGCTGAAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 19 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........TACAGGAGCTGGCTGAAACATCAGGAATGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 31 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
....TCAGGTACAGGAGCTGGCTGAAACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCAAAACAAGCCACATGGGGCTGCTC.......... 30 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......GGTACAGGAGCTGGCTGAAACATCAGGAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 31 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCAAAACAAGCCACATGGGGCTGCTt.......... 30 t 1.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................AAACATCAGGAATGGAAGCCAATct............................................................................................................................................................................................................................................................................................................................................................................................................................................. 25 ct 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
......................TGAAACATCAGGAATGGAAGCCAATGT............................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCAAAACAAGCCACATGGGGCTGCTCGAA....... 33 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
............AGGAGCTGGCTGAAACATCAGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............GAGCTGGCTGAAACATCAGGAATGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........CAGGAGCTGGCTGAAACATCAGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTGTCTGTCTTCTCTAGt................................................. 22 t 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...........................................................CCCAAGCTGGGGGCTAGAGAGCCGAGTACTGT................................................................................................................................................................................................................................................................................................................................................................................................... 32 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -

Antisense strand
TCCTTCAGGTACAGGAGCTGGCTGAAACATCAGGAATGGAAGCCAATGTGGTAAGGAGGCCCAAGCTGGGGGCTAGAGAGCCGAGTACTGTACTGGCTTAAGAATGATATGAGTCCCTGAGACACCAGTTCATGTTTGCTTTTCCCTGAAGCCCTGCCATTTGAGCAAGGCTGGGTCCTACTTTCTATTTTTTTTTTTTTTTTTTTTGTACAGAGAAACATGAGGGAGCCAGAACAGCCATACCACCTGCTAATTCTAGTTCCTTCTCTAGACCCTCCCAACCATTGGCATATGTTAGCAGCAGCAGCTGTAGAGACTGAGACTGGCCCTAACAATTGGCTTGACTCACCTCCAGGAAGAGAAAGGCAGGCAGGGAACAGTAGTTGGACTCACTCTGAGGTTTGGGGTTGTCTGTCTGTCTTCTCTAGACTATCCCAATCTGGCAAAACAAGCCACATGGGGCTGCTCGAAGTGTGGT


 Size Perfect hit Total Norm Perfect Norm SRR363964(GSM822766)
AdultGlobal 5'-RACEread_length: 105. (testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR037901(GSM510437)
testes_rep2. (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		GSM475279(GSM475279)
Miwi-IP. (miwi testes) 		SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
......................................................GCCCAAGCTGGGGGaact...................................................................................................................................................................................................................................................................................................................................................................................................................... 18 aact 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -