| Gene: Hmgn2 | ID: uc008vdr.1_intron_2_0_chr4_133522395_r | SPECIES: mm9 |
|
|
(6) OTHER.mut |
(4) PIWI.ip |
(2) PIWI.mut |
(21) TESTES |
| TTCTTTTTTAATAGCCACAGAGAAGATCTGCGAGGTTGTCTGCTGTAAGTGTATGCGTCTATTTCCTGATCTTTACCTGATACTGGGAACCACTTGGGGGCGGATCTCTGTGATCCCGTTGCATTATATATGGTGGCTGTTGCACATCTAGAGGTGTTTGCTGTTGTCCCACGTTCTGATGCTTAAGACTAAAGTGAAAGATGGCTTTTACATTGTAAAAGAAAGGTGATCCTGAGAACTAGTTTTCTAAGCTGTGGTTTGATGGGTTGTTTCTTGGGTCTGTGGTACTAATGGTTTCCTCTTCTCCCTCCCCCACTTTTCCAAAATAAGAAACCTGCTCCTCCAAAGCCAGAGCCCAAACCTAAAAAGGCCCCTGCGAA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT4() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................................................................................TAAGCTGTGGTTTGATGGG.................................................................................................................. | 19 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................CATTATATATGGTGGCTGTTG.............................................................................................................................................................................................................................................. | 21 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................AGAAGATCTGCGAGGTTGTCTGCTat.............................................................................................................................................................................................................................................................................................................................................. | 26 | at | 2.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................TGCTTAAGACTAAAGTGAAAGATGGCT.............................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................GGGTCTGTGGTACTAATGGT..................................................................................... | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................ACAGAGAAGATCTGCGAGGTTGTCTGC................................................................................................................................................................................................................................................................................................................................................. | 27 | 7 | 1.29 | 1.29 | 0.86 | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | 0.29 | - | - | - | - | - | - |
| ....................AGAAGATCTGCGAGGTTGTCTGCTatc............................................................................................................................................................................................................................................................................................................................................. | 27 | atc | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................GATACTGGGAACCACTTGGGGGCGGATC.................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................TGATACTGGGAACCACTTGGGGGCGGA.................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................AGAAGATCTGCGAGGTTGTCTGCTaat............................................................................................................................................................................................................................................................................................................................................. | 27 | aat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................GTTGTTTCTTGGGTCTGTGG............................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................ACCTGATACTGGGAACCACTTGGGGGC....................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............CCACAGAGAAGATCTGCGAGGTTatc.................................................................................................................................................................................................................................................................................................................................................... | 26 | atc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................TGTAAGTGTATGCGTCTATTTCCTGATC..................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TAAGACTAAAGTGAAAGATGGCTTTTA.......................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................CTGATACTGGGAACCACTTGGGGGCG...................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TTGTCTGCTGTAAGTGTATGCGTCTATT............................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..........................................................................................................TCTGTGATCCCGTTGCATTATATATGG....................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................ACAGAGAAGATCTGCGAGGTTGTCTGt................................................................................................................................................................................................................................................................................................................................................. | 27 | t | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................TGATACTGGGAACCACTTGGGGGCG...................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................TACCTGATACTGGGAACCACTTGGGGGCG...................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................CCTGATACTGGGAACCACTTGGGGGCG...................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................ACAGAGAAGATCTGCGAGGTTGTCTGCT................................................................................................................................................................................................................................................................................................................................................ | 28 | 7 | 0.57 | 0.57 | 0.43 | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................CAGAGAAGATCTGCGAGGTTGTCTGC................................................................................................................................................................................................................................................................................................................................................. | 26 | 7 | 0.43 | 0.43 | 0.14 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - |
| .................CAGAGAAGATCTGCGAGGTTGTCTGCT................................................................................................................................................................................................................................................................................................................................................ | 27 | 7 | 0.29 | 0.29 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - |
| ...........................CTGCGAGGTTGTCTGCT................................................................................................................................................................................................................................................................................................................................................ | 17 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................AGAGAAGATCTGCGAGGTTGTCTGCT................................................................................................................................................................................................................................................................................................................................................ | 26 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - |
| ..............CCACAGAGAAGATCTGCGAGGTTGTCTGCT................................................................................................................................................................................................................................................................................................................................................ | 30 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - |
| ........................GATCTGCGAGGTTGTCTGCT................................................................................................................................................................................................................................................................................................................................................ | 20 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................GAGAAGATCTGCGAGGTTGTCTGC................................................................................................................................................................................................................................................................................................................................................. | 24 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - |
| ..............CCACAGAGAAGATCTGCGAGGTTGTCTGC................................................................................................................................................................................................................................................................................................................................................. | 29 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................AGAGCCCAAACCTAAAAAGGCCCCTGC... | 27 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................TCCAAAGCCAGAGCCCAAACCTAAAAAGGCC........ | 31 | 12 | 0.08 | 0.08 | - | - | - | - | - | - | - | - | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................CCAAAGCCAGAGCCCAAACCTAAAAAG........... | 27 | 12 | 0.08 | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.08 | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................CTCCAAAGCCAGAGCCCAAACCTAA............... | 25 | 13 | 0.08 | 0.08 | - | - | - | - | - | - | - | - | - | 0.08 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................TGCTCCTCCAAAGCCAGAGCCCAAACC.................. | 27 | 14 | 0.07 | 0.07 | - | - | - | - | - | - | - | - | 0.07 | - | - | - | - | - | - | - | - | - | - | - | - |
| TTCTTTTTTAATAGCCACAGAGAAGATCTGCGAGGTTGTCTGCTGTAAGTGTATGCGTCTATTTCCTGATCTTTACCTGATACTGGGAACCACTTGGGGGCGGATCTCTGTGATCCCGTTGCATTATATATGGTGGCTGTTGCACATCTAGAGGTGTTTGCTGTTGTCCCACGTTCTGATGCTTAAGACTAAAGTGAAAGATGGCTTTTACATTGTAAAAGAAAGGTGATCCTGAGAACTAGTTTTCTAAGCTGTGGTTTGATGGGTTGTTTCTTGGGTCTGTGGTACTAATGGTTTCCTCTTCTCCCTCCCCCACTTTTCCAAAATAAGAAACCTGCTCCTCCAAAGCCAGAGCCCAAACCTAAAAAGGCCCCTGCGAA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT4() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................................................................................................................................................................................................CTGCTCCTCCAAAGCCAcaca............................. | 21 | caca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................CCTCCAAAGCCAGAGCCCAAACCTAA............... | 26 | 13 | 0.85 | 0.85 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.85 | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................CCTCCAAAGCCAGAGCCCAAACCTA................ | 25 | 13 | 0.38 | 0.38 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.31 | - | - | - | - | 0.08 |
| .............................................................................................................................................................................................................................................................................................................................................CCTGCTCCTCCAAAGCCAGAGCCCA...................... | 25 | 18 | 0.11 | 0.11 | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................CTCCAAAGCCAGAGCCCAAACCTAAAAA............ | 28 | 13 | 0.08 | 0.08 | - | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................CCTCCAAAGCCAGAGCCCAAACCTAAA.............. | 27 | 13 | 0.08 | 0.08 | - | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................CCAAAGCCAGAGCCCAAACCTAAAAA............ | 26 | 13 | 0.08 | 0.08 | - | - | - | - | - | - | - | - | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - |