| Gene: Atpbd1b | ID: uc008vdb.1_intron_1_0_chr4_133141982_f.3p | SPECIES: mm9 |
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(3) OTHER.mut |
(4) PIWI.ip |
(1) TDRD1.ip |
(18) TESTES |
| TGAGGACTGAACCCAGGGCTTTACCACTGAAGTCAATCCCCAGCCCTGGTTGTGGTTTTTAATCCCCCTTAGGGTGTTAGGAACGGAACCCAGGGCCTTGCAAATGCTAAACATGTCTATCACTGAGCTACACCCTCCGCTGCTGCAGCCCTGAGGCCTCCCGCCTAGTGTCAGCAGCATCTGACTCCATCTCTCCTCAGCCTTCAACCTGGACTACTACACGGAGGTCCTGGACCTTTCCTACCTGCTT ...................................................................((.((((..(((((...(((.((((((((..((((...((......(((...((...))...)))......))...)))))))))).))..)))..))))).(((((......)))))........)))).)).................................................. ................................................................65.....................................................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................TAGGGTGTTAGGAACGGAACCCAGGGC.......................................................................................................................................................... | 27 | 1 | 11.00 | 11.00 | 5.00 | 4.00 | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TTCAACCTGGACTACTACACGGAGGT...................... | 26 | 1 | 5.00 | 5.00 | - | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - |
| ..........................................................................................................................................................................................................TTCAACCTGGACTACTACACGGAGGTC..................... | 27 | 1 | 4.00 | 4.00 | - | - | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...........................................................TAATCCCCCTTAGGGTGTTAGGAACGGA................................................................................................................................................................... | 28 | 1 | 4.00 | 4.00 | - | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................TAAACATGTCTATCACTGAGCTACACCCT.................................................................................................................. | 29 | 1 | 3.00 | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - |
| ...........................................................................................................TAAACATGTCTATCACTGAGCTACACCCTC................................................................................................................. | 30 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ......................................................................AGGGTGTTAGGAACGGAACCCAGGGC.......................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................TAGGAACGGAACCCAGGGCCTTGCAAA.................................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TTCAACCTGGACTACTACACGGAGG....................... | 25 | 1 | 3.00 | 3.00 | - | - | - | - | - | 1.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - |
| ....................................................................................................CAAATGCTAAACATGTatc................................................................................................................................... | 19 | atc | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - |
| .............................................................................................................AACATGTCTATCACTGAGCTACACCCT.................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................CGGAGGTCCTGGACCTTTCCTACCTGC.. | 27 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TCAACCTGGACTACTACACGGAGGTCC.................... | 27 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ....................................................................TTAGGGTGTTAGGAACGGAACCCAGGGC.......................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TGGACTACTACACGGAGGTCCTGGACCTT............ | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................TCTGACTCCATCTCTCCTCAGC................................................. | 22 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TGGACTACTACACGGAGGTCCTGGACC.............. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TTCAACCTGGACTACTACACGGAGGTCCT................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .....................................................................TAGGGTGTTAGGAACGGAACCCAGagc.......................................................................................................................................................... | 27 | agc | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................GGGTGTTAGGAACGGAACCCAGGGCC......................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................TAGGAACGGAACCCAGGGCCTTGCAAATGC............................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................CAAATGCTAAACATGTCTATCACTGA............................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................CCGCCTAGTGTCAGCAGCATCTGACTCt.............................................................. | 28 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....ACTGAACCCAGGGCTTTACCACTGAAGT......................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................TTGCAAATGCTAAACATGTCTATCACTGAGCT......................................................................................................................... | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TGGACTACTACACGGAGGTCCTGGAC............... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................CTGACTCCATCTCTCCTCAG.................................................. | 20 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................CAGCCTTCAACCTGGACTACTACACGGAG........................ | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................AGCCTTCAACCTGGACTACTACACGGA......................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................TGAGGCCTCCCGCCTAGTGTCAGCAGC........................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .............................................................................TAGGAACGGAACCCAGGGCCTTGCAAAT................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................CATGTCTATCACTGAGCTACACCCTCC................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................................TCACTGAGCTACACCCTCCGCTGCTGCA....................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TGCTGCAGCCCTGAGGCCTCCCGCCTA................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................CTGAAGTCAATCCCCAGCCCTGGTTGT..................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ........................................................................................................TGCTAAACATGTCTATCACTGAGCTAC....................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TTGTGGTTTTTAATCCCCCTTAGGGTGct............................................................................................................................................................................ | 29 | ct | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TTGTGGTTTTTAATCCCCCTTAGGGTGTTA........................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................TAGGAACGGAACCCAGGGC.......................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................TCTGACTCCATCTCTCCTCAGCCT............................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................TACTACACGGAGGTCCTGGACCTTT........... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................CCAGGGCCTTGCAAATGCTAAACATGTC..................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TACACGGAGGTCCTGGACCTTTCCTACCTGCa. | 32 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .......................................................................GGGTGTTAGGAACGGAACCCAGGGCa......................................................................................................................................................... | 26 | a | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................TCTGACTCCATCTCTCCTCAGCCTTCAA........................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..AGGACTGAACCCAGGGCTTTACCACTGA............................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................TAAACATGTCTATCACTGAGCTACACCC................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TGCAAATGCTAAACATGTCTATCACTGAGC.......................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TGCAAATGCTAAACATGTCTATCACTGA............................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................TACTACACGGAGGTCCTGGACCTTTCCTA....... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................TCTGACTCCATCTCTCCTCAGCCTTCA............................................ | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................CCTTCAACCTGGACTACTACACGGAG........................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................TCAGCCTTCAACCTGGACTACTACACGG.......................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................TATCACTGAGCTACACCCTCCGCTGC........................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................CAGCCTTCAACCTGGACTACTACACGG.......................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TGAGGACTGAACCCAGGGCTTTACCACTGAAGTCAATCCCCAGCCCTGGTTGTGGTTTTTAATCCCCCTTAGGGTGTTAGGAACGGAACCCAGGGCCTTGCAAATGCTAAACATGTCTATCACTGAGCTACACCCTCCGCTGCTGCAGCCCTGAGGCCTCCCGCCTAGTGTCAGCAGCATCTGACTCCATCTCTCCTCAGCCTTCAACCTGGACTACTACACGGAGGTCCTGGACCTTTCCTACCTGCTT ...................................................................((.((((..(((((...(((.((((((((..((((...((......(((...((...))...)))......))...)))))))))).))..)))..))))).(((((......)))))........)))).)).................................................. ................................................................65.....................................................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................CACCCTCCGCTGCTggaa.......................................................................................................... | 18 | ggaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |