| Gene: AK049295 | ID: uc008uwx.1_intron_0_0_chr4_129060210_f.5p | SPECIES: mm9 |
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(7) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(3) PIWI.mut |
(23) TESTES |
| TGCCTTTCAGTCATTTCTGCTGCTGTAAGTAGCCCATCACCCACATTCCTGTAAGTAACCCCAATGAAGTTCATTGTTTCACCAAGCTGGACTCTGGTGGTTTCTGTACTTTAGCCTGTCATGGGTTTCCTATCTGGGTGGGTAGAGAGGAGTATGCTGTGTTCCCCAGGAAGAGTTTTTGTCACACAACAGTGACACACATCTTCAATCCCAGTACCTGGGAGGCAGAGGTAGCCAGAACCACTGTGGG ...............................................................................(((..(((...(((((.......(((.((((...((((...(((((...)))))..)))).)))).))))))))..))))))......................................................................................... ...............................................................................80...............................................................................161....................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................GAGTATGCTGTGTTCCCCAGGAAGAG........................................................................... | 26 | 1 | 7.00 | 7.00 | - | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................AGCTGGACTCTGGTGGTTTCT................................................................................................................................................. | 21 | 1 | 4.00 | 4.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGGGTTTCCTATCTGGGTGGGTAGA........................................................................................................ | 25 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TTCAATCCCAGTACCTGGGAGGCAGA..................... | 26 | 1 | 2.00 | 2.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TATCTGGGTGGGTAGAGAGGAGTATGC............................................................................................. | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .............................................................................................................................................................TGTGTTCCCCAGGAAGAGTTTTTGTCAC................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TATCTGGGTGGGTAGA........................................................................................................ | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................GAGAGGAGTATGCTGTGTTCCCCAGGA............................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TGTCATGGGTTTCCTATCTGGGTGGG............................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................TGCTGTGTTCCCCAGGAAGAGTTTTT...................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGGGTTTCCTATCTttgt............................................................................................................... | 18 | ttgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................TCTGGGTGGGTAGAGAGGAGTATGCTG........................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................TCTGGGTGGGTAGAGAGGAGTATGaaa........................................................................................... | 27 | aaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................GACTCTGGTGGTTTCTGTACTTTAGC....................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................AGCTGGACTCTGGTGGTTTCTGTACTT........................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................TGTGTTCCCCAGGAAGAGTTTTTGTCA.................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TTCAATCCCAGTACCTGGGAGGCAGAGGTA................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TATCTGGGTGGGTAGAGAGGAGTATGCTa........................................................................................... | 29 | a | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................TGGTGGTTTCTGTACTTTAGCCTGTCA................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................TGGTGGTTTCTGTACTTTAGCCTGTCc................................................................................................................................. | 27 | c | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................TTTCCTATCTGGGTGGGT........................................................................................................... | 18 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TTCAATCCCAGTACCTGGGAGGCAGAGGT.................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................GAGGAGTATGCTGTGTTCCCCAGGA............................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................TCCCCAGGAAGAGTTTTTGTCACACAAC............................................................ | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TGTCATGGGTTTCCTATCTGGctta............................................................................................................. | 25 | ctta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAAGTAACCCCAATGAAGTTCATTGTTT........................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................TGCTGTGTTCCCCAGGAAGAGTTTTTGT.................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................TGGTGGTTTCTGTACTTTAGCCTGTC.................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................TGTGTTCCCCAGGAAGAGTTTTTGTCt.................................................................. | 27 | t | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................CACAACAGTGACACACATCTTCAATCCCA..................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TATCTGGGTGGGTAGAGAGGAGTAT............................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................TGGGAGGCAGAGGTAGCCAGAACCACTGT... | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TGCCTTTCAGTCATTTCTGCTGCTGTAAGTAGCCCATCACCCACATTCCTGTAAGTAACCCCAATGAAGTTCATTGTTTCACCAAGCTGGACTCTGGTGGTTTCTGTACTTTAGCCTGTCATGGGTTTCCTATCTGGGTGGGTAGAGAGGAGTATGCTGTGTTCCCCAGGAAGAGTTTTTGTCACACAACAGTGACACACATCTTCAATCCCAGTACCTGGGAGGCAGAGGTAGCCAGAACCACTGTGGG ...............................................................................(((..(((...(((((.......(((.((((...((((...(((((...)))))..)))).)))).))))))))..))))))......................................................................................... ...............................................................................80...............................................................................161....................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................................CACAACAGTGACACACATCTTCAATCCCA..................................... | 29 | 1 | 3.00 | 3.00 | 1.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................TAGCCCATCACCCACATTCCTGTA..................................................................................................................................................................................................... | 24 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................GCCCATCACCCACATTCCTGTA..................................................................................................................................................................................................... | 22 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................CCATCACCCACATTCCTGTAA.................................................................................................................................................................................................... | 21 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................GGTGGTTTCTGTACTTTAGCCTGTCA................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................ACCCACATTCCTGTAAGTAACCCCAATG........................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................TAGCCCATCACCCACATTCCTGTAt..................................................................................................................................................................................................... | 25 | t | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................AAGTAGCCCATCACCCACATTCCTGTA..................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................CAACAGTGACACACATCTTCAATCCCA..................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................CCCATCACCCACATTCCTGTAAGTAACa............................................................................................................................................................................................... | 28 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................ACTCTGGTGGTTTCTGTACTTTAGCCTGT................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................TCCTGTAAGTAACCCCAATGAAGTTCAT................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........CATTTCTGCTGCTGTAAGTAGCCCA...................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................AGTGACACACATCTTCAATCCCAGTA.................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................GGTGGTTTCTGTACTTTAGCCTGTCAt................................................................................................................................. | 27 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................CACCCACATTCCTGTAAGTAACCCCAA.......................................................................................................................................................................................... | 27 | 6 | 0.83 | 0.83 | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - |
| ......................................ACCCACATTCCTGTAAGTAACCCCAAT......................................................................................................................................................................................... | 27 | 5 | 0.80 | 0.80 | - | - | - | - | - | - | - | - | - | 0.20 | - | - | - | - | - | - | - | - | 0.40 | 0.20 | - | - | - | - |
| ......................................ACCCACATTCCTGTAAGTAACCCCAA.......................................................................................................................................................................................... | 26 | 6 | 0.67 | 0.67 | - | - | 0.17 | - | - | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | 0.17 | - | 0.17 | - | - | - |
| .................................CCATCACCCACATTCCTG....................................................................................................................................................................................................... | 18 | 3 | 0.67 | 0.67 | - | - | - | - | - | - | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................CACCCACATTCCTGTAAGTAACCCCA........................................................................................................................................................................................... | 26 | 7 | 0.57 | 0.57 | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | 0.29 | 0.14 | - | - | - | - | - |
| ....................................TCACCCACATTCCTGTAAGTAACCCCA........................................................................................................................................................................................... | 27 | 6 | 0.50 | 0.50 | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 | - | 0.17 | - | - | - | - |
| ........................................CCACATTCCTGTAAGTAACCCCA........................................................................................................................................................................................... | 23 | 7 | 0.43 | 0.43 | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | 0.14 |
| ....................................TCACCCACATTCCTGTAAGTAACCC............................................................................................................................................................................................. | 25 | 8 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 | - | - | - | - | - | - | 0.12 | - | - | - | - |
| .....................................CACCCACATTCCTGTAAGTAACCC............................................................................................................................................................................................. | 24 | 10 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | 0.10 | - | - | - | 0.10 | - | - | - | - | - | - | - | - | - | - |
| .......................................CCCACATTCCTGTAAGTAACCC............................................................................................................................................................................................. | 22 | 11 | 0.18 | 0.18 | - | - | 0.09 | - | - | - | - | - | - | - | - | - | - | - | 0.09 | - | - | - | - | - | - | - | - | - |
| .......................................CCCACATTCCTGTAAGTAACCCCAA.......................................................................................................................................................................................... | 25 | 6 | 0.17 | 0.17 | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................ACCCACATTCCTGTAAGTAACCCCAAtt.......................................................................................................................................................................................... | 28 | tt | 0.17 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 | - | - |
| ..CCTTTCAGTCATTTC......................................................................................................................................................................................................................................... | 15 | 13 | 0.15 | 0.15 | - | - | 0.15 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................CCACATTCCTGTAAGTAACCCCAc........................................................................................................................................................................................... | 24 | c | 0.14 | 0.00 | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................CACATTCCTGTAAGTAACCCCAA.......................................................................................................................................................................................... | 23 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 | - | - | - | - | - |
| ...................................CACCCACATTCCTGTAAGTAACCCca............................................................................................................................................................................................. | 26 | ca | 0.10 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.10 | - | - | - | - | - | - |
| ..................................CACCCACATTCCTGTAAGTAACCCgtg............................................................................................................................................................................................. | 27 | gtg | 0.10 | 0.00 | - | - | - | - | - | - | - | 0.10 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |