(6)
OTHER.mut
(1)
OVARY
(7)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(28)
TESTES

Sense strand
ACAGAAGGCGACCAAGGACAAGTATCCTCCAGTCAATCGAAAATATGAATGTGAGTAGGTGGCCCACATCTCTTGCATTCGGACAACCTGCGGCTTCCTGCTTCGCCCACTTCTTTGCCCTAAAGGTGCTCTGGCGTGATCACAGTGTGCCCCTCTTTGGACCCAATTTAGGGGGAAAGTGAAGAAAAAGATCACCTTACTAGAGAATGAAGAAACCCGAGGCCGTATCCCCTGCCCCCATCCATTCTAA
....................................................................(((((.(((...(((......(((((.....))..))).....))).)))....((((((.(((.......((((......(((((..(((....)))....)))))...))))......))).))))))...)))))............................................
.................................................................66..........................................................................................................................................206..........................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
.....................................................................................................................................................................................................TACTAGAGAATGAAGAAACCCGAGGC........................... 26 1 15.00 15.00 - 7.00 - 2.00 - - - 2.00 - - - 1.00 - - - - - 2.00 - 1.00 - - - - - - - - -
......................................................................TCTTGCATTCGGACAACCTGCGGCTT.......................................................................................................................................................... 26 1 9.00 9.00 - 1.00 1.00 - 2.00 1.00 1.00 - - - - - 2.00 - 1.00 - - - - - - - - - - - - - -
.CAGAAGGCGACCAAGGACAAGTATCCTCC............................................................................................................................................................................................................................ 29 2 7.00 7.00 - - 3.00 - 1.00 1.00 1.00 - - - - - - - - 0.50 - - - - - - - - - - - 0.50 -
.....................................................................................................................................................................................................TACTAGAGAATGAAGAAACCCGAGGCC.......................... 27 1 6.00 6.00 - 1.00 3.00 - - - - - - - - 1.00 - - - - - - - - - - - - - 1.00 - - -
......................................................................TCTTGCATTCGGACAACCTGCGGCTTC......................................................................................................................................................... 27 1 6.00 6.00 - - - 2.00 - - - 2.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - -
.........................................................................TGCATTCGGACAACCTGCGGCTTCC........................................................................................................................................................ 25 1 6.00 6.00 4.00 - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
....................................................................TCTCTTGCATTCGGACAACCTGCGGC............................................................................................................................................................ 26 1 6.00 6.00 1.00 - - - 1.00 - - 2.00 - - - - - - - - 2.00 - - - - - - - - - - - -
.........................................................................TGCATTCGGACAACCTGCGGCTTCCT....................................................................................................................................................... 26 1 5.00 5.00 5.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................TTGCATTCGGACAACCTGCGGCTTCC........................................................................................................................................................ 26 1 4.00 4.00 - - 1.00 - - - - - - 1.00 - - - 1.00 - - - - - - - - - - 1.00 - - - -
..........................................................................................................................................................................................................GAGAATGAAGAAACCCGAGGCCGTATC..................... 27 1 4.00 4.00 - 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................TCTCTTGCATTCGGACAACCTGCGGCTT.......................................................................................................................................................... 28 1 4.00 4.00 - - - - 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................TCTTGCATTCGGACAACCTGCGGCTTCCTG...................................................................................................................................................... 30 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................TTCGGACAACCTGCGGCTTCCTGCTT................................................................................................................................................... 26 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................TTGCATTCGGACAACCTGCGGCTTCCT....................................................................................................................................................... 27 1 3.00 3.00 - - - - - - - - 1.00 - - - - 1.00 - - - - 1.00 - - - - - - - - - -
........................TCCTCCAGTCAATCGAAAATATGAATGTG..................................................................................................................................................................................................... 29 1 3.00 3.00 - - - - - - - - - - 2.00 - - - - - - - - - - - 1.00 - - - - - -
........................TCCTCCAGTCAATCGAAAATATGAATGT...................................................................................................................................................................................................... 28 1 2.00 2.00 - - - - - - - - - - 1.00 - - - - - - - - - 1.00 - - - - - - - -
.........................................................................TGCATTCGGACAACCTGCGGCTTCCTGC..................................................................................................................................................... 28 1 2.00 2.00 - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................TTGCCCTAAAGGTGCTCTGGCGTGATC............................................................................................................. 27 1 2.00 2.00 - - - - - - - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - -
......................................................................TCTTGCATTCGGACAACCTGCGGCT........................................................................................................................................................... 25 1 2.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
.................................................................................................................TTTGCCCTAAAGGTGCTCTGGCGTGATC............................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................TAGAGAATGAAGAAACCCGAGGCCGTATC..................... 29 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................TAGAGAATGAAGAAACCCGAGG............................ 22 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................TGAAGAAAAAGATCACCTTACTAGAGAA........................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................TCCTCCAGTCAATCGAAAATATGAATattt.................................................................................................................................................................................................... 30 attt 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................TGCATTCGGACAACCTGCGGCTTCCTG...................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................TTGGACCCAATTTAGGGGGAAAGTGA.................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.................................................................................................................TTTGCCCTAAAGGTGCTCTGGCGTGA............................................................................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................TGAAGAAAAAGATCACCTTACTA................................................ 23 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..AGAAGGCGACCAAGGACAAGTATCCTCt............................................................................................................................................................................................................................ 28 t 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
....................................................................TCTCTTGCATTCGGACAACCTGCGGCT........................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................TCTTGCATTCGGACAACCTGCGGCTTCCT....................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................TCTTGCATTCGGACAACCTGCGGCTTCC........................................................................................................................................................ 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................TTTGCCCTAAAGGTGCTCTGGCGTGAT.............................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.......................................................................CTTGCATTCGGACAACCTGCGGCTT.......................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..............................................................................................................................TGCTCTGGCGTGATCACAGTGTGCCCCT................................................................................................ 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................TTTGCCCTAAAGGTGCTCTGGCGTGATa............................................................................................................. 28 a 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
........................................................................TTGCATTCGGACAACCTGCGGCTTC......................................................................................................................................................... 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................TCGAAAATATGAATGTGAGTAGGTGGCC.......................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................TTCGGACAACCTGCGGCTTCCTGCTTCGCC............................................................................................................................................... 30 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................ATGTGAGTAGGTGGCCCA........................................................................................................................................................................................ 18 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..AGAAGGCGACCAAGGACAAGTATCCTCC............................................................................................................................................................................................................................ 28 2 1.00 1.00 - - - - - 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - -
.CAGAAGGCGACCAAGGACAAGTATCCTC............................................................................................................................................................................................................................. 28 2 0.50 0.50 - - - - - - - - - - - - - - - 0.50 - - - - - - - - - - - - -
.CAGAAGGCGACCAAGGACAAGTATCCTCCAG.......................................................................................................................................................................................................................... 31 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
..AGAAGGCGACCAAGGACAAGTA.................................................................................................................................................................................................................................. 22 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.50
.CAGAAGGCGACCAAGGACAAGTATCCTCt............................................................................................................................................................................................................................ 29 t 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
.....AGGCGACCAAGGACAAGTATCCTCCAG.......................................................................................................................................................................................................................... 27 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
..........ACCAAGGACAAGTATCCTCCAGTCAATCGA.................................................................................................................................................................................................................. 30 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - 0.50 - -

Antisense strand
ACAGAAGGCGACCAAGGACAAGTATCCTCCAGTCAATCGAAAATATGAATGTGAGTAGGTGGCCCACATCTCTTGCATTCGGACAACCTGCGGCTTCCTGCTTCGCCCACTTCTTTGCCCTAAAGGTGCTCTGGCGTGATCACAGTGTGCCCCTCTTTGGACCCAATTTAGGGGGAAAGTGAAGAAAAAGATCACCTTACTAGAGAATGAAGAAACCCGAGGCCGTATCCCCTGCCCCCATCCATTCTAA
....................................................................(((((.(((...(((......(((((.....))..))).....))).)))....((((((.(((.......((((......(((((..(((....)))....)))))...))))......))).))))))...)))))............................................
.................................................................66..........................................................................................................................................206..........................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
...............................................................................................TCCTGCTTCGCCCACTTCTTTGCCCTA................................................................................................................................ 27 1 4.00 4.00 - 1.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................CTGCTTCGCCCACTTCTTTGCCCTAA............................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................AAGTATCCTCCAGTCAAT..................................................................................................................................................................................................................... 18 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - 0.50 - - - - - - - - -