| Gene: C77080 | ID: uc008uwl.1_intron_3_0_chr4_128902717_r | SPECIES: mm9 |
|
|
|
(2) OTHER.mut |
(3) PIWI.ip |
(2) PIWI.mut |
(1) TDRD1.ip |
(14) TESTES |
| AGAAGCTGAGCAAGGGCGGCTGGGACCATGGAGACACCCAGAGCATCCAGGTGAGCCCTGTCCCAGCTCCGCCCTGCTCTTCCCTTCTGACTTAGCCTCTGGCATGCATGGCTTTGGGCCTTTCTGGACTAGTTTCTTCTGTATGTTGAAGAGGTAGATGAAATGACTTCTGACAGCTAGTCCAGGCTTGCTCCATCTGGTACCTGCACAGTGCTGGCTGATGCTGGGGGAATCCAGCGGGAGCCCAGAGTAGCTCATCCAAGCTGCTCTTATCCCCCCAACAGTCCTCCCAGACGGGGCCGGATGAAGATACCATCTCCATCTACAGCCAGAA ........................................................................................................................................................................................((...(((((..((((..((((((((((....)))).))).))).....))))..)))))..(((((((((......))))))))).......))....................................................... ........................................................................................................................................................................................185................................................................................................284................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR037901(GSM510437) testes_rep2. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................TGACTTAGCCTCTGGCATGCATGGCTT............................................................................................................................................................................................................................ | 27 | 1 | 4.00 | 4.00 | 3.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ................................................................................................................................................................AAATGACTTCTGACAGCTAGTCCAGGC................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................TGAAATGACTTCTGACAGCTAGTCCAGGC................................................................................................................................................... | 29 | 1 | 3.00 | 3.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...............................................................................TTCCCTTCTGACTTAGCCTCTGGCATG.................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..............................................................................................................................................................TGAAATGACTTCTGACAGCTAGTCCAG..................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGGACTAGTTTCTTCTGTATGTTGAA........................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...............................................................................................................................................................GAAATGACTTCTGACAGCTAGTCCAGGC................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................CAGACGGGGCCGGATGAAGATAC..................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ....................................................................................TTCTGACTTAGCCTCTGGCATGCATGGCT............................................................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................GTATGTTGAAGAGGTAGATGAAATGA........................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TTCCCTTCTGACTTAGCCTCTGGCATGC................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ....................................................................................TTCTGACTTAGCCTCTGGCATGCATGGC.............................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGGACTAGTTTCTTCTGTATGTTGAAG....................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........AGCAAGGGCGGCTGGGACCATGGAG............................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .......................................................................................TGACTTAGCCTCTGGCATGCATGGCTTT........................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........AAGGGCGGCTGGGACCATGGAGACAC......................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................GACGGGGCCGGATGAAGATACCATCT................ | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGGACTAGTTTCTTCTGTATGTTGAAGA...................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TCTGTATGTTGAAGAGGTAGATGAAAT.......................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................TAGTTTCTTCTGTATGTTGAAGAGGT................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TCTGTATGTTGAAGAGGTAGATGAAA........................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................TGGACTAGTTTCTTCTGTATGTTGAAGAGG.................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........AGCAAGGGCGGCTGGGACCATGGAa............................................................................................................................................................................................................................................................................................................. | 25 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AGAAGCTGAGCAAGGGCGGCTGGGACCATGGAGACACCCAGAGCATCCAGGTGAGCCCTGTCCCAGCTCCGCCCTGCTCTTCCCTTCTGACTTAGCCTCTGGCATGCATGGCTTTGGGCCTTTCTGGACTAGTTTCTTCTGTATGTTGAAGAGGTAGATGAAATGACTTCTGACAGCTAGTCCAGGCTTGCTCCATCTGGTACCTGCACAGTGCTGGCTGATGCTGGGGGAATCCAGCGGGAGCCCAGAGTAGCTCATCCAAGCTGCTCTTATCCCCCCAACAGTCCTCCCAGACGGGGCCGGATGAAGATACCATCTCCATCTACAGCCAGAA ........................................................................................................................................................................................((...(((((..((((..((((((((((....)))).))).))).....))))..)))))..(((((((((......))))))))).......))....................................................... ........................................................................................................................................................................................185................................................................................................284................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR037901(GSM510437) testes_rep2. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................................................................................................................................................................GAAGATACCATCTCCATCTACAGCCA... | 26 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................GAGGTAGATGAAATGACTTCTGACAGCTA........................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......AAGGGCGGCTGGGAagtc..................................................................................................................................................................................................................................................................................................................... | 18 | agtc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ........................................................................................................................................................GGTAGATGAAATGACTTCTGACAGCTA........................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................GACTTCTGACAGCTAGTCCAGGCTTGC............................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................TCTGACAGCTAGTCCAGGCTTGCTCCA........................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |