| Gene: Ncdn | ID: uc008utt.1_intron_4_0_chr4_126428098_r.5p | SPECIES: mm9 |
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(2) OTHER.mut |
(4) PIWI.ip |
(2) PIWI.mut |
(16) TESTES |
| CCCTCCGTGAGGCCAAGAATGACAGCGAGCAGTTTGCAGCCCTGCTGCTAGTAAGGACCTGGAAGGTGGGAGGGCTGGTCAGGAGGGCCCCCAAAGAATGGGGTCAGCAAGTCTCCAGGGGTATCTAAGTGGTATTGGCAACCCGGAGGTACCAAAAAAGGCCTGAGACCTCTACCTTTGTACTCTGTTCTCTTGAGAATGGGGGAAGGGGAGAAGAGGGGTGAATAAGACTGTGGCATGGGACCACGGA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................TAAGGACCTGGAAGGTGGGAGG................................................................................................................................................................................. | 22 | 1 | 10.00 | 10.00 | 10.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TAGTAAGGACCTGGAAGGTGGGAGGGC............................................................................................................................................................................... | 27 | 1 | 6.00 | 6.00 | - | 3.00 | - | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................TAGTAAGGACCTGGAAGGTGGGAGG................................................................................................................................................................................. | 25 | 1 | 5.00 | 5.00 | 3.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - |
| .............................................TGCTAGTAAGGACCTGGAAGGTGGGA................................................................................................................................................................................... | 26 | 1 | 4.00 | 4.00 | - | 1.00 | - | - | - | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - |
| ..................................................................TGGGAGGGCTGGTCAGGAGa.................................................................................................................................................................... | 20 | a | 4.00 | 0.00 | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................TACCTTTGTACTCTGTTCTCTTGAGAA................................................... | 27 | 1 | 3.00 | 3.00 | - | - | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TAGTAAGGACCTGGAAGGTGGGAGGG................................................................................................................................................................................ | 26 | 1 | 3.00 | 3.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - |
| ...TCCGTGAGGCCAAGAATGACAGCGAGC............................................................................................................................................................................................................................ | 27 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......GTGAGGCCAAGAATGACAGCGAG............................................................................................................................................................................................................................. | 23 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TAGTAAGGACCTGGAAGGTGGGAGa................................................................................................................................................................................. | 25 | a | 2.00 | 0.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TAGTAAGGACCTGGAAGGTGG..................................................................................................................................................................................... | 21 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - |
| ...................TGACAGCGAGCAGTTTGCAGCCCTG.............................................................................................................................................................................................................. | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - |
| ................................................TAGTAAGGACCTGGAAGGTGGGAGGGCTt............................................................................................................................................................................. | 29 | t | 2.00 | 1.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................TACCTTTGTACTCTGTTCTCTTGAGAATG................................................. | 29 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................TGCTAGTAAGGACCTGGAAGGTGGG.................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....................................................AAGGACCTGGAAGGTGGGAGGGCTGtaa.......................................................................................................................................................................... | 28 | taa | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAAGGACCTGGAAGGTGGGAGGG................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...................................................................................................................................................................................................................AGAAGAGGGGTGAATAAGACTGTGGC............. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............AGAATGACAGCGAGCAGTTTGCAGCCCT............................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAAGGACCTGGAAGGTGGGAGGGCTt............................................................................................................................................................................. | 27 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..............................................................................................................................................................................................TCTTGAGAATGGGGGAAGGGGAGAAG.................................. | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TAGTAAGGACCTGGAAGGTGGGAGGGCT.............................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......TGAGGCCAAGAATGACAGCGAGCAGTT........................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......GTGAGGCCAAGAATGACAGCGAGCAG.......................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................TGCTAGTAAGGACCTGGAAGGTGGGAa.................................................................................................................................................................................. | 27 | a | 1.00 | 4.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................GAGGGGTGAATAAGACTGTGGCATGa......... | 26 | a | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .CCTCCGTGAGGCCAAGAATGACAGCGA.............................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................TGACAGCGAGCAGTTTGCAGCCCTGC............................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......TGAGGCCAAGAATGACAGCGAGCAGT......................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CCCTCCGTGAGGCCAAGAATGACAGCGAGCAGTTTGCAGCCCTGCTGCTAGTAAGGACCTGGAAGGTGGGAGGGCTGGTCAGGAGGGCCCCCAAAGAATGGGGTCAGCAAGTCTCCAGGGGTATCTAAGTGGTATTGGCAACCCGGAGGTACCAAAAAAGGCCTGAGACCTCTACCTTTGTACTCTGTTCTCTTGAGAATGGGGGAAGGGGAGAAGAGGGGTGAATAAGACTGTGGCATGGGACCACGGA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT2() Testes Data. (testes) |
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